Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1824 ATGTCTCTGCAATCCTCCTCCTCCTCCTACTCTGCCCATCCATTTTCCTCTTCTTTCATCCGATATGAATGGAAATACGATGTGTTTATTAGTTTCAGAGGCCGAGATACTCGCTATGATTTCACTGGCAACCTCTACAAGGCTCTTTGTGACAAAGGAATTCTCACCTTCTTTGATGATGGCGAGCTTCAAAGCGGAGAGGAAATCACACCTGCACTTCTCAAGGCAATTGAAGAGTCCAGGATTGCCATCGTTGTACTCTCTCCTAACTATGCTTCTTCTTCTTTTTGCTTAGACGAACTGGTCCATGTCCTTCACTGCATCAAGGGAAACAATCGGTTTGTTTTGCCAGTTTTCTTTAAGGTGGATCCTTCTGATGTGCGCCATCTAAAAAACAGTTTTGGAGAAGCAATGGATAAGCATGAGAAGAGATACAAGGATGACATGAATAAGAAGGTGGACAAATGGAAAAAGGCTCTGCCTCAAGTGGCTAATTTATCAGGCTATCATTTCAAAGATGGGCATGGATATGAGCATCAGTTTATTAAAAAGATCGTGCAAGACATTTCAAGAAAGATTGGGCGTCTACCTTTGCCAGTGGCTGACTTCCCTGTTGGACTCGAGTCTCCAGTGTCAGAAGTGATTTCACTTTTGGAAATGGATTCTACTGATCGAGTTCACATGGTAGGGATACATGGAATTGGTGGCATAGGAAAAACAACACTTGCTCTTGCTCTTTATAACTTTATTGCTGACAATTTTAAAGGTGTGTGTTTTCTTGAAAACGTGAGAGAAAATTCACAAAAATATGGGTTGGTGCATCTTCAAAACAATCTTCTTTGTAAGATATTAGGAAAGGAGGGAGTCCAGATAATAGGTGTTAAGGAAGGAATTTCACAGATACAACGTAGACTCAGTCAAACAAAAGTTCTTTTGGTTCTGGATGATGTTGATGAGCATGAACAGTTGACAGCTATTGCGGGAAAACCTGATTGGTTTCATCCTGGAAGCAGAATCATTATTACAACACGGGACAAACATTTGCTGACGCTTCATGACATTGAAAGAACATATGAGGTACAAGGTTTGAATGAGGAAGAGTCCTTAGATTTGCTTCAATGGAAGGCTTTTAAAACAGATATTATCAACCCAAGGTATAAGAATGTTTTAACCCGTGCAGTAACTTATGCTTCTGGACTTCCATTGGCTTTGGAAGTTATAGGTTCTAACTTGTTTGGAAAAGATTTAGAACAATGGGAATCTGCAATGGATCAATATGAAGAAGTTCTTGATAATAAAATACGTAAGATACTTCAGGTTAGTTTTGATGCTTTGGGAGAAGATGTGCAGAGTGTTTTTCTTGATATTGCTTGTTGTTTTAAAGGATATAAATCAGTGGAAGTTACAGCTATACTTCAAGCTCAATATGGGAGGAGTATGAAATATCATATTGGAATGTTGGTTGAAAAATCTCTCATAAAGATTGATCATCTATTCAGAATAACATTACATGATCTAATAGAGGACATGGGCAAAGATATATGTCGAGAAAAATCGTCAAAAGTGCCTGGAAAACATAGTAGATTATGGTTCTACAAGGATATAGTTAAAGTTTTAGAAGATAATCAAGGAACTAGTGCCATTGAAATCATACATTTGGAATTTCCTTTATTTAGAAAGGAAGGAGGTGAAGATCCGTCAAAAAAAGAGAAAAATGATGATGTAGAAGTAAAATGGGATGGAACAGCTTTTAAAGAGATGAAAAATCTCAAAACACTTATCATAAAAAATGGTCGTTTTTCCAGAGGGCCCAAATACCTTCCAAATAGTTTAAGAGTATTGGAATGGAGGAGATATCCATCGAGATATTTTCCCTCTAATTTTGATCCAGAAAAGCTTTCCATACTCAAGTTGCCTGATTATCTCTACATGTCACCCAAGTTGGATAGCATATCCAAGATGTTGATCACCTTGAAAGTTTTGAGTTTTGATTACAGTGATTCTTTGAAAGAGATACCTGATGTGTCTAATATTCAAACTTTAGAAGAATTTTCTTTTGAAGGATGTAGTAATTTAGTCTCAGTTCACAGTTCAGTTGGTTTTTTACCTAAACTTAGAATATTGAATGCTGAAAAGTGTCCCAAGCTCAGAAGTTTTCCACCTGTTATTAATTTGCCCTCACTGGAAATGCTCGGTCTATCTGGATGCTCAAGCCTTGAGAAATTTCCAGAAATTCCAGAAGAGATGAAAAATCTAGAAGAGCTTGATTTGATTGGCACTGGGATAAAAGATTTGCCATGTTCATTTTGTAACCTTTCTAGATTGTGGCATTTGTATTTGGAGGAGAATAAAATGCATAAAATACCAAGTGTCATTTGCATGATGCCAAGCCTGGATTTTTGTAATATTAACTTAGGAGGAAACAAGGGGAGGGTATCGGGAGAGCAGGAAGAGGGGCTTCACGGAATATTCACTCACTCTCTCCCCTCTTCAGATATGGAACACCTTTCTCTCAAGAACAGCAATTTGTCAGATGAGTTTTTTCCACTAGCTGTTGCATGGTTTCCCAATGTGGAATTTTTAGACCTAACAGGCAATAATTTCACGGTCTTTCCTGAATGCATCCAACAATTTCGCTTTCTAAAGATACTCAAGGTGGATGATTGCGAGCATCTTCGGGAGATTAGAGGGATTCCACCGTGCTTGACAGACTTCTCAGCAGTAAACTGTGGAAGGATTCCAAGGTGGTTTGAGTGGCGCAGCAGGGGAGCTTCTATTTCTTTCTGGTTTCGTGGCACCATATTCCCTTACAAATCTCTTTGCGTTGCAATTCTACTCAAACATGACATCCTTTCCCCACCACTTCAAGTAAAACCCACTGTGACCATCAATGGCAACCAAGTTCAATTTGGACGGTATGGCCTTATGGGTCAATTATTTATTTTTAATCTGAAGAGAGATGATTATTATTATGAAGCACCACATTTTAAAAGAGGATGGAATCATGTGAAGCTTTCATATGAAGCATATTATAAGGGTTTTGAGGGAAAGGTCTCAAGTGAGTCAATTGGAAAAGAGATTGGAATGCACGTATGGAAGGAAGAGAGTAGTAGTATAATGGAAGATATTCGATTCACTGATCCATACAAAATGACACAACTAATTATAATGATGATCATGCTCTCAATAGCATTCCCCAACCATAAGAACCACCCCTTGCTCCTCCAAACATGCATTGGTTATTGGACCTTGCTCTTTCTAACTATGTATGATTTGGATAATGACAGTGAATTAGGGTCGGAAGGATCAAATATCAGCGACGGTTCAATGGCATCCACAGAGCTAGCGGGTGCAGAACTTGGGTGTGCCCAAATGTAA 3378 0.3851 MSLQSSSSSYSAHPFSSSFIRYEWKYDVFISFRGRDTRYDFTGNLYKALCDKGILTFFDDGELQSGEEITPALLKAIEESRIAIVVLSPNYASSSFCLDELVHVLHCIKGNNRFVLPVFFKVDPSDVRHLKNSFGEAMDKHEKRYKDDMNKKVDKWKKALPQVANLSGYHFKDGHGYEHQFIKKIVQDISRKIGRLPLPVADFPVGLESPVSEVISLLEMDSTDRVHMVGIHGIGGIGKTTLALALYNFIADNFKGVCFLENVRENSQKYGLVHLQNNLLCKILGKEGVQIIGVKEGISQIQRRLSQTKVLLVLDDVDEHEQLTAIAGKPDWFHPGSRIIITTRDKHLLTLHDIERTYEVQGLNEEESLDLLQWKAFKTDIINPRYKNVLTRAVTYASGLPLALEVIGSNLFGKDLEQWESAMDQYEEVLDNKIRKILQVSFDALGEDVQSVFLDIACCFKGYKSVEVTAILQAQYGRSMKYHIGMLVEKSLIKIDHLFRITLHDLIEDMGKDICREKSSKVPGKHSRLWFYKDIVKVLEDNQGTSAIEIIHLEFPLFRKEGGEDPSKKEKNDDVEVKWDGTAFKEMKNLKTLIIKNGRFSRGPKYLPNSLRVLEWRRYPSRYFPSNFDPEKLSILKLPDYLYMSPKLDSISKMLITLKVLSFDYSDSLKEIPDVSNIQTLEEFSFEGCSNLVSVHSSVGFLPKLRILNAEKCPKLRSFPPVINLPSLEMLGLSGCSSLEKFPEIPEEMKNLEELDLIGTGIKDLPCSFCNLSRLWHLYLEENKMHKIPSVICMMPSLDFCNINLGGNKGRVSGEQEEGLHGIFTHSLPSSDMEHLSLKNSNLSDEFFPLAVAWFPNVEFLDLTGNNFTVFPECIQQFRFLKILKVDDCEHLREIRGIPPCLTDFSAVNCGRIPRWFEWRSRGASISFWFRGTIFPYKSLCVAILLKHDILSPPLQVKPTVTINGNQVQFGRYGLMGQLFIFNLKRDDYYYEAPHFKRGWNHVKLSYEAYYKGFEGKVSSESIGKEIGMHVWKEESSSIMEDIRFTDPYKMTQLIIMMIMLSIAFPNHKNHPLLLQTCIGYWTLLFLTMYDLDNDSELGSEGSNISDGSMASTELAGAELGCAQM* 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1824 1125 Gene3D - 195 357 IPR027417 -
Amo12g1824 1125 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 169 IPR035897 -
Amo12g1824 1125 SMART AAA_5 225 363 IPR003593 -
Amo12g1824 1125 Gene3D - 21 194 IPR035897 -
Amo12g1824 1125 ProSiteProfiles TIR domain profile. 24 193 IPR000157 GO:0007165
Amo12g1824 1125 SMART till_3 25 166 IPR000157 GO:0007165
Amo12g1824 1125 Gene3D Ribonuclease Inhibitor 578 747 IPR032675 -
Amo12g1824 1125 Gene3D Ribonuclease Inhibitor 748 922 IPR032675 -
Amo12g1824 1125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 456 IPR027417 -
Amo12g1824 1125 Pfam TIR domain 25 192 IPR000157 GO:0007165
Amo12g1824 1125 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 36 935 IPR044974 GO:0006952
Amo12g1824 1125 Gene3D - 362 446 IPR042197 -
Amo12g1824 1125 PANTHER ARCHAEAL ATPASE 36 935 - -
Amo12g1824 1125 SUPERFAMILY L domain-like 580 916 - -
Amo12g1824 1125 Coils Coil 416 436 - -
Amo12g1824 1125 PRINTS Disease resistance protein signature 397 411 - -
Amo12g1824 1125 PRINTS Disease resistance protein signature 228 243 - -
Amo12g1824 1125 PRINTS Disease resistance protein signature 304 318 - -
Amo12g1824 1125 PRINTS Disease resistance protein signature 723 739 - -
Amo12g1824 1125 Pfam NB-ARC domain 209 444 IPR002182 GO:0043531
Amo12g1824 1125 SUPERFAMILY "Winged helix" DNA-binding domain 432 540 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1824 Amo-Chr12 87181877 87186000 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1824 26 804 WRKY Transcription Factor Family AT4G12020 30.846 5.55e-83 295