Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1820 ATGGAAGAATTCCAAGAGTACATTCAACTTTTTTTAATTTGGCTAATCTCCACAATTGTGATTCGAGCTATTCTCATAAGACACCACAACAATGGCGACCAACATCATCAAAATCCACCAAACCCACCAGCACTACCCATCATTGGACACCTTCACCTAATCTCTTCATTACAACATCAAACCTTGCACAATCTCTCAGCCCGCTATGGACCCATCTTTCAAATCTTTCTCGGCTCATTCCCTTGTGTAGTAGTTTCTGCGCCAGAAATCGCCAAAGAATTTCTCAAAACTCATGATTCTTCTTTCTCTGGCCGTTTCGTGAAGTCGAGCGCACAATATTACATGACTTATGGCTTAAAGGGGCTGGTACTCACCCCTTACGGAAGCTACTTCAAGTTCATGAAGAAGCTCTGCATGGCAGAGCTTCTTGGCAAAAGAACCCTAGACCAACTTCTTCCTTTAAGACGTGAAGAAACTCTGAGGTTCCTCAAACTCTTGCAGAAGAAAGGGGAAGCTGGAGAAGCTGTTGATGTTAGTGGTGAAATCATTACTCTCACTAATAGTGTCATTTCAAGAATGACAATGAGCGTAAGGTGTTGCGCAGAAGGAGGCGGCAGTTTAGTTGACAGTGAAGAAATAAGAAAGATGGTGAAAGACATTACCGAGGCTGCTAGAAAGTTTAATAATGTTTTAGATTTTATTTGGTTATTTAAGAATTGGGACTTGCATGGGATAAATAAGAGGGCTAAGGAGATTAAGGAGAGATTTGATTCAATGATGGAGAGAGTCATTAGGGAGCATGAATTGGCCAGGAAGAAAATGAAGAAAGAAGGAGTAGATGCAGGTGGGAGAGTGAAGGATCTACTTGATATTTTGCTGGACATACTTGAAGATAATAAGAAAATTGATGAGATACAATTAACTAAAGAGAATATCAAGGCTTTCATCTTGGACATATTCGTGGCAGGAACTGACACATCAGCTATAAACATCGAATGGGCTCTAGCAGAATTGATCAACAACCCGAATGTGATGGAAAAAGCAAGAAAAGAAATCGATTTGGTAACTGCAAACAATAGATTAGTACAAGAGTCAGATCTCGCTAATCTTCCTTATTTACAAGCCATAGTTAAAGAAACCCTAAGACTTCACCCTGTAATTCCACTTCTAGCAAGACAATCAACCTCTAAGACATCTGTTAATGTTTGTGGCTATGAAATTGTATCAAAGTCCATATTATTTATTAATTTATGGTCTATGGGTAGAAACCCCAAGATTTGGGAGAATCCACTTGAGTTTATGCCTGAGAGGTTCATTGATGAAGAAAGACAATTATTAGATTTGAGGGGTCAAAATTTTCAATTATTACCATTTGGGACTGGAAGAAGAGTGTGTCCTGGAGCTTCACTAGCACTTCTAACTGTACCCAGTACTCTTGCTGCTATGATTCAGTGCTCTGAATGGAAGGTTGATGGGAATTTTAGTATGGAAGAGCAACCTCATAGTGGCGTCACACTTGCTAGGGCTCATCCTTTAATTTGTGTTCCTGTGCCTCGCTTTCATCAATTGAGCTATCTTGGAGAAAATTAG 1590 0.3975 MEEFQEYIQLFLIWLISTIVIRAILIRHHNNGDQHHQNPPNPPALPIIGHLHLISSLQHQTLHNLSARYGPIFQIFLGSFPCVVVSAPEIAKEFLKTHDSSFSGRFVKSSAQYYMTYGLKGLVLTPYGSYFKFMKKLCMAELLGKRTLDQLLPLRREETLRFLKLLQKKGEAGEAVDVSGEIITLTNSVISRMTMSVRCCAEGGGSLVDSEEIRKMVKDITEAARKFNNVLDFIWLFKNWDLHGINKRAKEIKERFDSMMERVIREHELARKKMKKEGVDAGGRVKDLLDILLDILEDNKKIDEIQLTKENIKAFILDIFVAGTDTSAINIEWALAELINNPNVMEKARKEIDLVTANNRLVQESDLANLPYLQAIVKETLRLHPVIPLLARQSTSKTSVNVCGYEIVSKSILFINLWSMGRNPKIWENPLEFMPERFIDEERQLLDLRGQNFQLLPFGTGRRVCPGASLALLTVPSTLAAMIQCSEWKVDGNFSMEEQPHSGVTLARAHPLICVPVPRFHQLSYLGEN* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1820 529 PRINTS P450 superfamily signature 322 339 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo12g1820 529 PRINTS P450 superfamily signature 375 386 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo12g1820 529 PRINTS P450 superfamily signature 456 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo12g1820 529 PRINTS P450 superfamily signature 465 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo12g1820 529 SUPERFAMILY Cytochrome P450 39 519 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo12g1820 529 Pfam Cytochrome P450 39 506 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo12g1820 529 Gene3D Cytochrome P450 24 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo12g1820 529 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 458 467 IPR017972 GO:0005506|GO:0016705
Amo12g1820 529 PANTHER CYTOCHROME P450 FAMILY PROTEIN 4 524 - -
Amo12g1820 529 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 4 524 - -
Amo12g1820 529 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo12g1820 529 PRINTS E-class P450 group I signature 90 111 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo12g1820 529 PRINTS E-class P450 group I signature 311 328 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo12g1820 529 PRINTS E-class P450 group I signature 331 357 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo12g1820 529 PRINTS E-class P450 group I signature 374 392 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo12g1820 529 PRINTS E-class P450 group I signature 416 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo12g1820 529 PRINTS E-class P450 group I signature 455 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo12g1820 529 PRINTS E-class P450 group I signature 465 488 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1820 Amo-Chr12 87023386 87025663 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1820 1 525 Cytochrome P450 AT5G06900 42.667 4.34e-143 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1820 K24188 - gmx:100805931 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g1820 12 87023386 87025663 Amo02g1990 02 65482396 65486288 hybridization
Amo16g0154 16 2035127 2037184 Amo12g1820 12 87023386 87025663 PCT
Amo12g1820 12 87023386 87025663 Amo16g0157 16 2092713 2095435 PCT