Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1817 ATGGGATTCTCTATAACTATTCAAGAACAAACACCACAAGAGGATCAAGAAGCAAAGCCTTTCATGGCTTCAAATAGTGGTAGTTTTAAGAGCATCAACTCAAGTACTACACCTACTCAACTTGAACCACTCCATCTACATCATAATCATCATCATCATCATCATAATCAAATACAAGAGCAACAACAACACCAAATTTCCTTCGGAATGATGCCATCTTCTTCTTCTTCATCTATCCCAGGAAACTATCTAAACAGAGATTCCGGAGCTTATGATTTGGGTGAACTGGATCAAGCCTTTTTCATGTATCTTGATGGTCAGCCTGACCCCTCTACTGTTCAAGACCAAAGACCAGAGAACTCATCATCTTCAGGAATGAGGCCACCAACTCTCAACATTTTCCCCTCTCAGCCTATGCACGTAGACCCCCCGCCATCCAATTCCAAGGCTACAACGGAATTGGYTTCTGCCCAAACCAATGGTTCCAAGAGRCCATCAGAGCCGTCCATGGAATCAACCAACCCGCGAAATAATGCCGCTTCTGCTCCTGAACCACCCAAACCTATAAAGCGAGAGAACAACCGCAAGGGCACAACTTCAAGTTCTGAACAAGAGGGACCAAAAACACCAGATCCTAAGACACTAAGAAGACTTGCCCAGAATAGAGAGGCAGCAAGGAAAAGCAGGCTGAGGAAAAAGGCGTATGTTCAGCAGCTAGAAACAAGTAGGATTAAGCTGAATCAGTTGGAACAAGAGTTACAGAGAGCCAGAGCTCAAGGCATTTTCATGGGTGGAAATGCACTTTTGGGAGGAGAACAAGGCCTTCCTCTTCCTATGACTACTATTACCTCAGAGGCAGCAATGTTTGACATGGAATATGGAAGGTGGTTAGAGGAGCACCACCGTCTAGTGTGCGAACTAAGAGCAGCGGTGCAGGAACACCTGCAGGAGAACGAGCTAAGAATGTACGTTGAAAATTGCTTGGGTCATTATGACCAAGTGATTAATCTGAAGAGCATTGTGGCCAAAACAGACGCATTTCATATTGTTTTTGGAATGTGGAAAACACCAGCTGAACGCTGTTTCATGTGGATCGGTGGCTTCAGGCCTTCTGAACTCATTAAGGTTATTATGGCTCAAATTGAGCCTCTTACGGAGCAACAAATATTAGGGATATGTGGGTTGCAACAAACAACACGTGAGGCAGAAGAAGCTCTATCCCAAGGGCTTGAAGCTCTCAATCAATCACTAACAGAAACCATAACATCAGATTCATTGAGTTCTCCACCAAACATGGTTAATTACATGGGACAAATGGCTGTGGCCATGAGCAAGCTTTCAACTATCGAAGGTTTCCTTAGGCAGGCAGATAATYTGAGGCAGCAAACACTGCACCGTCTGCATCAGATTCTAACAACACGGCAATCCGCAAGGTGTTTGCTGGCAATAGCGGAGTACTTCCATCGCCTTAGAGCTCTCAGTTCTCTTTGGATGTCACGCCCTCGCCAAGAATAA 1515 0.4475 MGFSITIQEQTPQEDQEAKPFMASNSGSFKSINSSTTPTQLEPLHLHHNHHHHHHNQIQEQQQHQISFGMMPSSSSSSIPGNYLNRDSGAYDLGELDQAFFMYLDGQPDPSTVQDQRPENSSSSGMRPPTLNIFPSQPMHVDPPPSNSKATTELXSAQTNGSKRPSEPSMESTNPRNNAASAPEPPKPIKRENNRKGTTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLNQLEQELQRARAQGIFMGGNALLGGEQGLPLPMTTITSEAAMFDMEYGRWLEEHHRLVCELRAAVQEHLQENELRMYVENCLGHYDQVINLKSIVAKTDAFHIVFGMWKTPAERCFMWIGGFRPSELIKVIMAQIEPLTEQQILGICGLQQTTREAEEALSQGLEALNQSLTETITSDSLSSPPNMVNYMGQMAVAMSKLSTIEGFLRQADNLRQQTLHRLHQILTTRQSARCLLAIAEYFHRLRALSSLWMSRPRQE* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1817 504 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 211 255 IPR004827 GO:0003700|GO:0006355
Amo12g1817 504 MobiDBLite consensus disorder prediction 209 225 - -
Amo12g1817 504 Pfam bZIP transcription factor 213 251 IPR004827 GO:0003700|GO:0006355
Amo12g1817 504 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 97 503 - -
Amo12g1817 504 MobiDBLite consensus disorder prediction 102 230 - -
Amo12g1817 504 MobiDBLite consensus disorder prediction 109 131 - -
Amo12g1817 504 MobiDBLite consensus disorder prediction 60 84 - -
Amo12g1817 504 MobiDBLite consensus disorder prediction 1 43 - -
Amo12g1817 504 Pfam Seed dormancy control 304 378 IPR025422 GO:0006351|GO:0043565
Amo12g1817 504 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 216 231 IPR004827 GO:0003700|GO:0006355
Amo12g1817 504 SUPERFAMILY Leucine zipper domain 213 255 IPR046347 GO:0003700|GO:0006355
Amo12g1817 504 ProSiteProfiles DOG1 domain profile. 286 500 IPR025422 GO:0006351|GO:0043565
Amo12g1817 504 CDD bZIP_HBP1b-like 213 265 - -
Amo12g1817 504 MobiDBLite consensus disorder prediction 1 90 - -
Amo12g1817 504 SMART brlzneu 209 275 IPR004827 GO:0003700|GO:0006355
Amo12g1817 504 PANTHER TRANSCRIPTION FACTOR TGA9 97 503 - -
Amo12g1817 504 Gene3D - 212 261 - -
Amo12g1817 504 MobiDBLite consensus disorder prediction 143 180 - -
Amo12g1817 504 Coils Coil 232 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1817 Amo-Chr12 86772551 86784822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1817 81 504 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 63.205 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo12g1817 DOG1 8.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1817 K14431 - gmx:100815176 743.036