Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1810 ATGGTGTCATGTAGCAGAGTGGTTAATGAAATGGGATGCGGTAGTGGTGATGATCCGGATTCGGCCGGTGAAATGCCCAAAATGGCAGGCGACGACGAGGAAAAAATGCTTGACATAGGAATGGAGGAGGATGAGTTTGAGGGTTTTCGATATAACCAGAGTGAATTCATTGCCAACACGAAATCTGATGCATTACCGGTTACTGCGGCGGATGTACTTAAGATGGAGTTTAATAGTCCAGTGGAAGCCACTATTTTCTATGAAGAGTATAGTAGGGTGAAGGGTTTTGCGATACGACAAGGAAAGAAGTTGAAAAATAAGAATGGTGATTTTGTTCATTACACATATCTATGTAACAGACAAGGGTTCAGAGACAAGAAATGGCTAGAGAAGGTGGATCGGAAGAGGGAGCACAAGGTGGTGACTCGTTGTGGATGTCCTGTGGAGATGCGTATTAAGCCTAAAGGGGACAGTGGGAGATGGTTTGTGTCTCGTTTTGTGGAGGAACATGACCATGAGCTCCTGCCTATGAAGTATGTGGACTATCTACCTACTCACCGTAAGATCTCTGATGTTGATATTGCACACATGGATAATATGAGGCAAGTTGGGATATCAATTCCAAAGATCTATGAGTCTATTGCTGTACAGGCAGGTGGTTTTAATTTTGTTCCATTTACTAAGCGAGATATGGACAATAAAGAAGAGCTTGACTTCCGATCATCGTACGGGACGCCGGTCCTTCAAACCCAGTTTCTGGAGTTAGAAAAGTCAGGGGCAATAAACTTCACACGGGAAATTTTCTCAAGATATCGTGAGTCGCTTAAAAGGTGTGTTTGGGTCACTATATTGGAGTGCATTAAACGTGAAGATAGGTGTGTGTATGTGACACAAAAGCATAGAAGACCTGATTCACGATGGAATGTGGTACATATGAGAAGGAAAGAGGAGTTTGTTTGCAATTGCCTGAGGATGGAGTCATTTGGTTTGCCATGTGTTCACATACTAGCAGTTTTGGTTAGGTTAGATTTTGATTCCCTTCCTAAGAATCTAGTGTTGCCGCGGTGGTCCAAAGCGGCGAAGGAGGATCTTTGTTATGAACGGTTAAGTAGCCAATACGGTGATGCCAGTGTTTTATATCGGAGTAGAGTGGGTGCATTCCTGCAGCACTGCAAGCGATTAGCAAAAGTTGCATGTGGTGCGGTTGCTGGGACCAGAATTAGCAACATTGGAGGGGTTAGGGATCCTGTTAGTGTTCGGACTAAAGGCACAGGACGTGGCAATGAACCTCTTGGGTCTAGGGGTATCAAGCGGCTTAAGTGCAGCACATGCGGGTGTCTCGGTCATCGAAGGACCCGCTGTCCCAATGCTCCACCGACATCAGCACTGGTCCCTAAATCTAAGAACAAGGGATAA 1416 0.4506 MVSCSRVVNEMGCGSGDDPDSAGEMPKMAGDDEEKMLDIGMEEDEFEGFRYNQSEFIANTKSDALPVTAADVLKMEFNSPVEATIFYEEYSRVKGFAIRQGKKLKNKNGDFVHYTYLCNRQGFRDKKWLEKVDRKREHKVVTRCGCPVEMRIKPKGDSGRWFVSRFVEEHDHELLPMKYVDYLPTHRKISDVDIAHMDNMRQVGISIPKIYESIAVQAGGFNFVPFTKRDMDNKEELDFRSSYGTPVLQTQFLELEKSGAINFTREIFSRYRESLKRCVWVTILECIKREDRCVYVTQKHRRPDSRWNVVHMRRKEEFVCNCLRMESFGLPCVHILAVLVRLDFDSLPKNLVLPRWSKAAKEDLCYERLSSQYGDASVLYRSRVGAFLQHCKRLAKVACGAVAGTRISNIGGVRDPVSVRTKGTGRGNEPLGSRGIKRLKCSTCGCLGHRRTRCPNAPPTSALVPKSKNKG* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1810 471 MobiDBLite consensus disorder prediction 1 26 - -
Amo12g1810 471 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 70 197 IPR031052 GO:0006355
Amo12g1810 471 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 234 367 - -
Amo12g1810 471 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 70 197 - -
Amo12g1810 471 Pfam FAR1 DNA-binding domain 86 176 IPR004330 -
Amo12g1810 471 ProSiteProfiles Zinc finger SWIM-type profile. 308 343 IPR007527 GO:0008270
Amo12g1810 471 Pfam SWIM zinc finger 320 340 IPR007527 GO:0008270
Amo12g1810 471 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 234 367 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1810 Amo-Chr12 86687826 86690479 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo12g1810 FAR1 3.4e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1810 - - adu:107466802 431.024