Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1782 ATGGATTCAAATTCGCTTCAAGGCTATCAACTTGAACAACAACAAAGCAGTAGTTCTGGTTTGCTTCGTTATCGCTCTGCACCGAGTTCGCTTCTCGCGAATCTCACTCCAACTTTCACTGAATCCCAAGCCTTGCTCTCGAGATTAGCCAATAGTAATAGCAGTAGCAGCAAAAACAATATTTCCAAAAACGATACCGTTTCACATAGCTTCCAAGAATTCCCAGATACAAACACAAACACAAACACAAAAACAAACAATAAGGGTTGTGATTCGAAGGGTCTGAGGCGGATGAATTCTGGAGGGCGCGGATATGGTGGTGGTGGTGGATTGCCACCTCACTACCCAAGGAACACTTCTTCTTCTTCTTCTTCTTCTTGTTCATCTTCAATGGATGGGTCTTTAGGGTTGGTTATGGGTTCAATGGGAATGGACCAAAAAGGGTTTGGCGTTTCTTCTTCTTTAAATCTTCTCAGGCAGAATAGTTCCCCTGCTGACCTTTTCTCCAACGTTTCATTTCAAAATGGATTTGCTACCATGAAAGGTGTCGGGAACTATGGTCATGTTAACAGCACCAGCGAAGAACTTAGTCCATCGATGAACAGATTGAAGAATCAGATTAGCTTCTCATCAAGAACTGCTTCTTCCTTGGGAATGTTGTCGCAGATCTCCGAAATAGGGAACGAGGAAATTGGGGCAAATAGCCCTGAAGATGGGAGGCAGGGTGGTAGCAATGGTGATGCCTTGCATTACAGCCCCGGATTCTGCTATGGTTCTTGGAGTGATGCACCACAACACTCTGAAAACCTCACTGGCTTGAAAAGAGGGCGAAGTAGCAATGGAAAGTTGTTTCCTGATGTTCAGAATGGAGAGCTAGGAAATCAAGTTCATATGCTATCACATCACTTGAGTTTGCCGAAAACTTCATCAGAGATGATTGGTATGGAGAATCTGCTTCAGTTCCCAGATTCTGTTCCTTGTAAAATCAGAGCGAAGCGAGGCTGCGCTACTCATCCCCGAAGCATAGCTGAAAGGGTACGAAGAACACGGATCAGCGAACGAATGAGGAAATTGCAAGAGCTGGTCCCAAACATGGACAAGCAAACCAACACAGCAGACATGTTGGACTTGGCGGTTGACTACATTAAAGATCTTCAGAAACAATTCAAGAATCTAAGTGAAAAGAGGGCAAACTGCAAATGTATAAGCATGCGGAGAGCAGATACAAATCAAATTGTTTAA 1242 0.4388 MDSNSLQGYQLEQQQSSSSGLLRYRSAPSSLLANLTPTFTESQALLSRLANSNSSSSKNNISKNDTVSHSFQEFPDTNTNTNTKTNNKGCDSKGLRRMNSGGRGYGGGGGLPPHYPRNTSSSSSSSCSSSMDGSLGLVMGSMGMDQKGFGVSSSLNLLRQNSSPADLFSNVSFQNGFATMKGVGNYGHVNSTSEELSPSMNRLKNQISFSSRTASSLGMLSQISEIGNEEIGANSPEDGRQGGSNGDALHYSPGFCYGSWSDAPQHSENLTGLKRGRSSNGKLFPDVQNGELGNQVHMLSHHLSLPKTSSEMIGMENLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQKQFKNLSEKRANCKCISMRRADTNQIV* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1782 413 Pfam Helix-loop-helix DNA-binding domain 340 386 IPR011598 GO:0046983
Amo12g1782 413 MobiDBLite consensus disorder prediction 268 288 - -
Amo12g1782 413 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 335 385 IPR011598 GO:0046983
Amo12g1782 413 Gene3D - 336 406 IPR036638 GO:0046983
Amo12g1782 413 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 13 405 - -
Amo12g1782 413 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 338 399 IPR036638 GO:0046983
Amo12g1782 413 PANTHER TRANSCRIPTION FACTOR BHLH130 13 405 - -
Amo12g1782 413 SMART finulus 341 391 IPR011598 GO:0046983
Amo12g1782 413 MobiDBLite consensus disorder prediction 1 21 - -
Amo12g1782 413 MobiDBLite consensus disorder prediction 51 130 - -
Amo12g1782 413 MobiDBLite consensus disorder prediction 51 93 - -
Amo12g1782 413 MobiDBLite consensus disorder prediction 115 130 - -
Amo12g1782 413 Coils Coil 375 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1782 Amo-Chr12 85725200 85728152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1782 1 390 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 45.792 1.43e-86 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo12g1782 HLH 4.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1782 - - aip:107625483 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g1782 12 85725200 85728152 Amo12g1782 12 85725200 85728152 ECH
Amo12g1782 12 85725200 85728152 Amo18g0072 18 1551861 1554774 ECH
Amo12g1782 12 85725200 85728152 Amo13g0565 13 7170646 7174327 ECH
Amo12g1782 12 85725200 85728152 Amo02g1967 02 64441243 64444458 hybridization
Amo16g0160 16 2120094 2123039 Amo12g1782 12 85725200 85728152 PCT
Amo12g1782 12 85725200 85728152 Amo16g0160 16 2120094 2123039 PCT