Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1762 ATGTACTCACGCCCACATCATAGAAGAGAGAGAGAGCAGCTAGTCACCCCCACCTTCTCCATCGTGCGTCGCTCACTGTTTTCGTGGCCTCACCTCTGTTCGCGATGGTTGACTGATTCTATTACATTGAAAAAATCAGTGCATTTAGGGCTTCAAGGTGTGGCTCTAGCTTCTGGAATATTTGGAATTTGGATTAATTTTCATGGGAAGGATGGTATTGTGGTCAATTTCTATAGTCTTCATTCATGGATGGGTTTGATTTGCACTTCCCTCTTTGGAACAGAGTTCAACCAAGAAGAAGGACGAGCTACATTGACGTGTGATAAACACATGGCTTCTTCCTCTTCCTCTCCAGCTCCGTTACAGACTACTATGCTTCTTGGTTCGCCTAGTTTCCCAAACGCCATTGCTTGGTCCCAAGACAACCTCCTTGCTGTTGCTACCACCCATTTCGTTACCATTCTTAGACCAGACATGCCTCATGGACCACGTGGAATAATCAAAATCTCTCCAATTGAGCCATTCCTCTCTGGCTTTGTTGAAAGAAAAGATTTAATCTCTGGATGCCTCCTCCCTATTAGTTTGTACCGTGATGATAAGCCTGTTGTTCAGTCAATATCATGGTCGCCACTTGGCATTTCTTTGAATTCAGGGTGCTTGTTGGCTGTTTGCACTAGCGAAGGACACGTGAAGGTTTATCGTCCACCCTTTTGTGATTTCTGTTCAGAATGGATTGAGGTTGTGAACGTTAGTGAACGTCTATTTGAATATTTGCAATGTACTGAGTTTCAAGGCACGGGGACTCCATTAGAGTTTTCCAAAAGAAATGCATCAGATGAAATAGATTCTGTGGCTAAACCTAAAAAGAAATCCTTGAAAACAGTTCCCGAGAACGACATGTTGCCTGTGATAAGTGCTGATCAATATGCTACTCGCAGCGCAGTGCTAAGCTCAATTGTTGTTTCATGGTCTCCTTTACTGCATGATATTCATGCTACTGTCAGCCTACTTGCTGTTGGAGGGAAGTCTGGTAAAATTTCTTTATGGAGATTTTATGCACCAGATTGCTATACTATTGAGGGTGGAAAAATCCCATCTGCTGTGAAATTTGTTGGATTTCTTGAAGCACACAATTCATGGGTTACAACAATAAGTTGGTTGTCATTTTCTGTTAATTCCTCAAATCCACAAATTTTATTAGTTACTGGAAGCTCTGATGGGAGTGTCAAGGTTTGGTTGGGTGACTATCACAAATTGATTAAATCAACAGAAGTGGATCAGAATGTGTTCATTTTGTTGAAGGAGGTTATCACTGTCAATGTTGTCCCAGTTTCTGTACTTTCAGTAACTGTGCATGTTCAATGCTCTTCCAAGATGCTTTTAGCAATAGGCAAAGGTTCTGGTTCCTTTGAAATATGGCTATGTGACATATCTTCTAAGGAATTCAACAAGCTTGGTTCATATGATGCACATGACTATATTGTTACTGGCTTGGCATGGGCATTTGGTGGAAGATGTTTGTACAGCTGTAGCCAGGATAATTTAGTGCGTAGCTGGATTTTGCGCGATAGATGCCTAGAAGAAGTACCTGTTCATATGCCTCATAATAACAATTCATCCAGCGCTTCAAATGATGTATATGATTCATGCCTTGGTGCAGCAGTTTCACCTGGAAATCTTGTTGTCGCTACTGTTCATTGCTTTGATGTTGAGAAACTGAATCGAATGTATGAAGGAAGGGTACTGAGAGCAGCTATTGATTACCATTGGATTGGTGGGCTACATGTGGATATTTGCTTGAATCGTCCTGTTCCATTTTACACTGAAGAACATTCCGGTTTGGCAGAGAAAGATTTAACCAATTGGGGTTCCAATATCATATGGTCTTTGAACCAATATCAGTGTCTTGATAGGCCCCTAGTTCTTTTGGATATAATTTTGGCATTATTGGACTTCAAGGTCAGCATGCCAAGATATGTAGAGCATTTACTCATCAAGTGGATCTCTCTGTCTTTTCCGGGATTTCATACGGACCTTCCCAGTGAAAAGACTTTACTGCAGGTCTCTTCAAGTTTGTCAGGTGTTCCTTCTCGCATGCTACACTTGCTCAATATAATTTGTAGACGAGTAATGTTGGCGCAGCTGGATGCTGATGAAATCACACGAATATCCAGCGAAGTTCAAAACACTAAAGGGGAATGCTGTTCTATGGACGAACAAGTAACCAAGTGGATAGCAATTCTTGGAAGCAGTGAAAGAGAACTCCGTGAAAGGCTTGTTGGTTTTAGTTTTTGTGCTTCTCAAACTAGCAAGTCCCGTCCAGGGGCAACTCCTTTCCAAACCGGTCATTGGTATCCTGTTGGACTAGCACAAATGGAACAATGGATTGCGCTAAACAACGATCATGTACGTGGCGAGTTGAAATCCATTGCATCAGAGGTTACCAATGAGAAAAGATGTTCAGCTCTGGAGTCATGCAGTTATTGTTCAGCATCAGTTCCATTTGAGTCCCCAGAGTTTGGTTTATGTCAAGGCAAAACTTCAGGCAGTGGCAGCAATGATAAGCGGCATAAGTTATCAAGATGCGCCGTTAGTATGAAGGTTTGCCCTAGTATCCCACTGTGGTTTTGTGTGTGTTGCCATAGGGTGGCGTTTAGGTTGGCGCCTGACCCACTTTTTGGAATGTCTTCGTTTCAGTTTGATTCTGATTTTGTAACCAAATCTTTGTCTCGAGCAGTTTCCTCAAAACCATTGTGTCCCTATTGTGGGATATTGCTACAGAGACGTCAACCTGATTTTCTAGTTTCTCCATTACCTGTATGA 2823 0.4205 MYSRPHHRREREQLVTPTFSIVRRSLFSWPHLCSRWLTDSITLKKSVHLGLQGVALASGIFGIWINFHGKDGIVVNFYSLHSWMGLICTSLFGTEFNQEEGRATLTCDKHMASSSSSPAPLQTTMLLGSPSFPNAIAWSQDNLLAVATTHFVTILRPDMPHGPRGIIKISPIEPFLSGFVERKDLISGCLLPISLYRDDKPVVQSISWSPLGISLNSGCLLAVCTSEGHVKVYRPPFCDFCSEWIEVVNVSERLFEYLQCTEFQGTGTPLEFSKRNASDEIDSVAKPKKKSLKTVPENDMLPVISADQYATRSAVLSSIVVSWSPLLHDIHATVSLLAVGGKSGKISLWRFYAPDCYTIEGGKIPSAVKFVGFLEAHNSWVTTISWLSFSVNSSNPQILLVTGSSDGSVKVWLGDYHKLIKSTEVDQNVFILLKEVITVNVVPVSVLSVTVHVQCSSKMLLAIGKGSGSFEIWLCDISSKEFNKLGSYDAHDYIVTGLAWAFGGRCLYSCSQDNLVRSWILRDRCLEEVPVHMPHNNNSSSASNDVYDSCLGAAVSPGNLVVATVHCFDVEKLNRMYEGRVLRAAIDYHWIGGLHVDICLNRPVPFYTEEHSGLAEKDLTNWGSNIIWSLNQYQCLDRPLVLLDIILALLDFKVSMPRYVEHLLIKWISLSFPGFHTDLPSEKTLLQVSSSLSGVPSRMLHLLNIICRRVMLAQLDADEITRISSEVQNTKGECCSMDEQVTKWIAILGSSERELRERLVGFSFCASQTSKSRPGATPFQTGHWYPVGLAQMEQWIALNNDHVRGELKSIASEVTNEKRCSALESCSYCSASVPFESPEFGLCQGKTSGSGSNDKRHKLSRCAVSMKVCPSIPLWFCVCCHRVAFRLAPDPLFGMSSFQFDSDFVTKSLSRAVSSKPLCPYCGILLQRRQPDFLVSPLPV* 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1762 940 SUPERFAMILY WD40 repeat-like 127 538 IPR036322 GO:0005515
Amo12g1762 940 Pfam WD domain, G-beta repeat 483 519 IPR001680 GO:0005515
Amo12g1762 940 Pfam WD domain, G-beta repeat 372 412 IPR001680 GO:0005515
Amo12g1762 940 Gene3D - 187 427 IPR015943 GO:0005515
Amo12g1762 940 PANTHER GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 4 FAMILY 120 925 IPR044230 GO:0000127|GO:0004402|GO:0006384
Amo12g1762 940 Pfam Transcription factor IIIC subunit delta N-term 130 267 IPR024761 -
Amo12g1762 940 PANTHER GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 4 120 925 - -
Amo12g1762 940 Pfam Eukaryotic cytochrome b561 39 94 IPR006593 -
Amo12g1762 940 Gene3D - 433 584 IPR015943 GO:0005515
Amo12g1762 940 SMART WD40_4 367 413 IPR001680 GO:0005515
Amo12g1762 940 SMART WD40_4 481 520 IPR001680 GO:0005515
Amo12g1762 940 SMART WD40_4 189 234 IPR001680 GO:0005515
Amo12g1762 940 ProSiteProfiles Trp-Asp (WD) repeats profile. 374 412 IPR001680 GO:0005515
Amo12g1762 940 Gene3D - 24 164 - -
Amo12g1762 940 ProSiteProfiles Trp-Asp (WD) repeats profile. 488 519 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1762 Amo-Chr12 84550847 84560458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1762 32 144 Chloroplast and Mitochondria Gene Families AT1G26100 41.593 1.53e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1762 - - ahf:112745959 1258.05