Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1759 ATGGCGCCAAAGAATAAGAAGAGATCTAGGGTTTCCAACGACGAAGAAGAAATCGCATATGAACAGCCACACTCCCCTCAGAACAACAACGAAAACACCCTCTATCAGGTACTTGGTGTAGAGAGAACAGCATCACAACAGGAAATAAAGAAGGCTTATTACAAGTTAGCATTGAGGCTGCATCCTGACAAAAACCCTGGTGATGAGGAGGCTAAAGCAAAATTTCAGCAACTGCAAAATGTTATCTCGATTCTTGGGGATGAAGAAAAGCGAGCCATTTATGATCAGACTGGTTGTGTTGATGATGCTGACCTTGCCGGGGATGTTGTCCAGAATCTTCGCAACTACTTTAGAACAATGTACAAGAAGGTCACTGAATCTGATATTGAGGAGTTTGAAGCAAACTATAGGGGATCTGACTCAGAGAAAAATGATTTGATTGATTTGTACAAGAAGTGCAAGGGTCATATGAACAGGCTATTCTGTTCAATGCTTTGTTCTGATCCCAAATTTGATTCTCACCGATTCAAGGATATTCTTGATGAGGCCATAGCAGCTGGAGAACTTAAAGAAACAAAAGCTTATAAGAAATGGGCAAAAAGAATATCAGAAATCAAGCCACCAACTAGTCCTTTAAAGAGGAGGGTCAAACCAAGTAAGAAACCAGAAACAGATCTTTATGCCATCATCTCACAACGTCGAAATGAGAGAAGAGACAAGTTTGAATCTATGTTTTCATCTCTAGTTTCAAAATATGGTGGAAGTAATGTGCCGGAACCCTCTGAAGAGGAATTTGAAGCTGCACAAAGGAAGATGGAAAGCCGACGTTCCGCAAAGAAATCAAAGCGGAAATAA 855 0.4058 MAPKNKKRSRVSNDEEEIAYEQPHSPQNNNENTLYQVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKAKFQQLQNVISILGDEEKRAIYDQTGCVDDADLAGDVVQNLRNYFRTMYKKVTESDIEEFEANYRGSDSEKNDLIDLYKKCKGHMNRLFCSMLCSDPKFDSHRFKDILDEAIAAGELKETKAYKKWAKRISEIKPPTSPLKRRVKPSKKPETDLYAIISQRRNERRDKFESMFSSLVSKYGGSNVPEPSEEEFEAAQRKMESRRSAKKSKRK* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1759 284 Pfam DnaJ domain 34 95 IPR001623 -
Amo12g1759 284 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 5 284 - -
Amo12g1759 284 MobiDBLite consensus disorder prediction 1 31 - -
Amo12g1759 284 MobiDBLite consensus disorder prediction 7 21 - -
Amo12g1759 284 PRINTS DnaJ domain signature 35 53 IPR001623 -
Amo12g1759 284 PRINTS DnaJ domain signature 53 68 IPR001623 -
Amo12g1759 284 PRINTS DnaJ domain signature 70 90 IPR001623 -
Amo12g1759 284 PRINTS DnaJ domain signature 90 109 IPR001623 -
Amo12g1759 284 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 5 284 IPR042977 -
Amo12g1759 284 MobiDBLite consensus disorder prediction 252 284 - -
Amo12g1759 284 CDD DnaJ 33 87 IPR001623 -
Amo12g1759 284 SUPERFAMILY Chaperone J-domain 32 106 IPR036869 -
Amo12g1759 284 Gene3D DnaJ domain 18 113 IPR036869 -
Amo12g1759 284 ProSiteProfiles dnaJ domain profile. 33 98 IPR001623 -
Amo12g1759 284 SMART dnaj_3 32 90 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1759 Amo-Chr12 84476506 84479560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1759 35 95 C2H2 Transcription Factor Family AT1G74250 40.909 1.03e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1759 K09529 - gmx:100781463 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g1759 12 84476506 84479560 Amo12g1759 12 84476506 84479560 ECH
Amo12g1759 12 84476506 84479560 Amo02g1936 02 62824412 62827495 hybridization
Amo16g0186 16 2529903 2532655 Amo12g1759 12 84476506 84479560 PCT
Amo12g1759 12 84476506 84479560 Amo16g0186 16 2529903 2532655 PCT