Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1757 ATGGAGAGTGACAAGATGGAAGATTATGAAGTGATACAGCAGCTTGGAAGAGGAACATTGGGTGCCACTTTTCTTGTTCTCCATAAAACTCAGAAACAACGGTGTGTGCTGAAGAAGATTCGGTTCTCTAAGCAAACAGATAAGTCACAGCTATCATCAGCACCCCAAGAGATGAACCTGATTGCAAAACTAAGTAGCCCTTATATTGTGGAGTGCAAAGATGCTTGGGTAAAAAAGGGGGACTATGTATACATTATATCTGCTTATTGTGAAGGAGGTGACATGGCTCAGTATATAAAGAAAGCCCGAGGATCATTCTTCCCTGAGGAGAGAGTTTGCAAATGGATGACTCAGTTGTTGCTAGCTGTGGACTACCTGCACTCCAATCGAGTACTCCACAGAGATCTTAAGTGTTCCAACATACTCCTCACGAGAGACAATAACATTCAGATAGGTGACTTTGGTCTTGCAAAGCTACTTAATAAAGAAGACCTTCCTTCCCCGGTTATTGGAACTCCAAACTACATGTGTCCTGAGCTTCTAGATAATATACCTTACGGTTATAAATCCGATATATGGACCCTTGGTTGCTGCATGTTTGAAATCGTCGCACATCAACCAGCATTTCGTGCTCCGGACAGGGCAGGACTAATCAATAAGATAAATAGATCCTCGATTTCTCCATTTCCAATTGTTTACACTCCCACACTGAAACAACTGATTAAAAGCATGCTGAGGAGAAATCCAGAACATAGACCTACAGCAGCCGAGTTATTAAGGCATCCTCATTTACTACCTTATGTTCTTCGCTGTCGCAATGCATCGCCTGTTTTTCTTCCGGTACATCTCATAAATAGTAGCCCAAAGGATAAAACAAAGCAATCTCCCAAAAAATCTAGTGGTGGCAGAGATCATAGAGAAAAACAAGAAGGATTTGCAAATCATATGGAGCAAGTTCGTCTTATTGAGGGAAATGCGGAGGTACATGTAACTAATCATCATAATGATGGCAAACTAACAGTCTCGACAAGTGCCGAAGACTTCCTTGAAACCAAGATGGTTGATCCTACCAGCTACACGATGGAAACTGCAGCCAGTGTTAGTGGCTCGAAAGATGGGTCAATTACTTCTGATTCAACCATTTGCAGTGTGTGCAAGGAAGCAGACTTTAAAGGTAGACTTGCAAAGGAAGCAACAGAAAGTGAGATCACATCAAAGAGTACACTAGATTCTGTGAATGTGGAACAAGGATTTGCTGCTGAAAATTTTCTCCAGTCAGATTCAGTTAATGTAACTACAGCAGCCACAAAAATCGAAGACACTCTTCCCAAACCCATGGACTCCTGTAAATCAATAATGTCTAGTCAAGACAGTACTGTCGGCAATGATAAAGATGACTTTGTCAACGAAGAAAGATCATCCCCAGTTTTGCAGCCGGTCAGGCTCGAGAAAGACACCGAATCTGATGGCAGCTTAAAGAAAAGTGAAAACCATGATGCATTTACTGAAGTCTCACATTTGGACTGCTTGTCATCTGCAAGTAACGATACACTTCCCGGCAAGGATGAAGGTGTTGCAACCACAGCTGCGCATAAAGAAGGCAGTAATGCTGCAGTAGTTGTTGATAAAACGACAAATGGCATTTCTTTAAGCAGACCTACTTCAAAAGGTGGGGACGGAACAACAAAGAGCGTGTTGATTAATAGATCCCAGAACAGAGCTGATGCTCTGGAAGCTTTGCTTGAGTTATGTGCTCAGCTGCTTAAACAAGGGAAACTTGATGAACTGGCTGCTGTGTTAAGACCATTTGGAGAAGACACTGTCTCATCAAGAGAAACAGCAATATGGCTGACAAAGAGTCTTCTTTCATCACAGAAATTTAATTCAGAAACCTAA 1896 0.4193 MESDKMEDYEVIQQLGRGTLGATFLVLHKTQKQRCVLKKIRFSKQTDKSQLSSAPQEMNLIAKLSSPYIVECKDAWVKKGDYVYIISAYCEGGDMAQYIKKARGSFFPEERVCKWMTQLLLAVDYLHSNRVLHRDLKCSNILLTRDNNIQIGDFGLAKLLNKEDLPSPVIGTPNYMCPELLDNIPYGYKSDIWTLGCCMFEIVAHQPAFRAPDRAGLINKINRSSISPFPIVYTPTLKQLIKSMLRRNPEHRPTAAELLRHPHLLPYVLRCRNASPVFLPVHLINSSPKDKTKQSPKKSSGGRDHREKQEGFANHMEQVRLIEGNAEVHVTNHHNDGKLTVSTSAEDFLETKMVDPTSYTMETAASVSGSKDGSITSDSTICSVCKEADFKGRLAKEATESEITSKSTLDSVNVEQGFAAENFLQSDSVNVTTAATKIEDTLPKPMDSCKSIMSSQDSTVGNDKDDFVNEERSSPVLQPVRLEKDTESDGSLKKSENHDAFTEVSHLDCLSSASNDTLPGKDEGVATTAAHKEGSNAAVVVDKTTNGISLSRPTSKGGDGTTKSVLINRSQNRADALEALLELCAQLLKQGKLDELAAVLRPFGEDTVSSRETAIWLTKSLLSSQKFNSET* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1757 631 Gene3D Phosphorylase Kinase; domain 1 1 89 - -
Amo12g1757 631 Pfam Protein kinase domain 9 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g1757 631 MobiDBLite consensus disorder prediction 448 462 - -
Amo12g1757 631 MobiDBLite consensus disorder prediction 285 309 - -
Amo12g1757 631 Gene3D Transferase(Phosphotransferase) domain 1 92 336 - -
Amo12g1757 631 ProSiteProfiles Protein kinase domain profile. 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g1757 631 SUPERFAMILY Protein kinase-like (PK-like) 6 300 IPR011009 -
Amo12g1757 631 MobiDBLite consensus disorder prediction 482 498 - -
Amo12g1757 631 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 472 614 - -
Amo12g1757 631 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 4 470 - -
Amo12g1757 631 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 472 614 - -
Amo12g1757 631 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 4 470 - -
Amo12g1757 631 MobiDBLite consensus disorder prediction 446 498 - -
Amo12g1757 631 MobiDBLite consensus disorder prediction 291 309 - -
Amo12g1757 631 CDD STKc_Nek 8 264 - -
Amo12g1757 631 SMART serkin_6 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g1757 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1757 Amo-Chr12 84441893 84450328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1757 15 264 MAP Kinase Kinase Kinase AT1G53570 31.890 5.42e-33 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Amo12g1757 Pkinase 6.1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1757 K08857 - gmx:100793379 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g1757 12 84441893 84450328 Amo12g1757 12 84441893 84450328 ECH
Amo16g0188 16 2544363 2549421 Amo12g1757 12 84441893 84450328 PCT
Amo12g1757 12 84441893 84450328 Amo16g0188 16 2544363 2549421 PCT