Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1726 ATGGAGAAGATTTCACTAACAACAACTGCTCATAACTGTTTCTTCACTTCTACACTTCCAAAGACATCTTCTTTCTCTTCTTCTCTATTCGCCTCTAACCAGCTTCTTGGTCTTCCCTTATCTTCTTCTTCTTCTTCTTCTTCTGCGTCCACCAATCCCCGCCTCAGACTTGTTTCTAGAAACGCCGCTTCTTGCAGAACCGTCAAATGCTCTGTTTCTGAAGCCGCTGAACCCCTAACTGCTTCAGAGAGGAGGCAATTGAAGAGAAGAGGGGATGTAAGGAACATAGCAATTGTTGCTCATGTTGATCATGGAAAAACAACTCTAGTTGATGCCATGTTGAAACAGACAAAGGTGTTTCGTGATAATCAATTTGTGCAGGAAAGGATAATGGACTCAAATGATTTGGAGCGTGAGAGAGGAATCACAATATTGAGTAAAAATACATCCGTCTCCTATCATGACACAAAGATTAATATAATAGATACTCCCGGTCACTCTGATTTTGGAGGTGAAGTAGAGCGTATCCTGAACATGGTGGAAGGAATCCTTCTAGTGGTAGATTCTGTTGAAGGACCAATGCCACAGACAAGATTTGTCTTAAAGAAAGCATTAGAGTTTGGTCATTCAGTTGTTGTGGTTGTTAATAAGATAGACAGGCCATCTGCTCGCCCAGATTTTGTTGTCAATTCAACTTTTGAACTCTTCATTGAATTAAATGCAACAGATGAGCAGTGCGACTTTCAAGTAATATATGCAAGTGGTATAAAAGGACAAGCAGGGTTGTCTCCTGAGAATCTGGCAGAAGACCTTGGGCCATTGTTTGAGTCCATCATCAGATGCATCCCAGGACCAAGGATTGATAAAGATGGCGCTCTTCAAATGCTTGTCACAAATATTGAGTATGATGAACACAAAGGGCGTATAGCAATTGGGCGCTTGCAAGCTGGAGTTTTGGAAAAAGGCATGGATGTCAAGGTATGCACATCAGAAGATTCATGTAGATATGGAAGAGTTAGTGAGCTTTACGTGTATGATAAATTCAGTAGGGTCCCTGCAGAAAGTGTGGAGGCTGGTGATATATGTGCAGTATGCGGAATTAGTGATATTCAGATTGGAGAGACAATTGCTTGTAAAGTGTCTGGAAAGCCACTACCTTCCATAAAGGTGGAGGAACCAACCGTGAAAATGGCTTTCTCCATAAACACTTCCCCTTTTGTTGGCCGCGAGGGAAAGTATGTTACGAGTAGGAACTTAAGGGACAGGCTTTATCGTGAACTTGAGCGAAACCTCGCCATGAAAGTTGAAGATGGTGAAACAGCAGATACATTCATTGTCAGTGGGCGTGGAACTTTGCATATCACCATACTGATTGAAAATATGCGAAGAGAAGGATATGAATTCATGGTTGGCCCTCCTAAAGTTATCAACAAGAAAGTTAACGACAAATTGCTAGAACCATATGAGATTGCAACTGTTGAGGTACCTGAAGAACATATGGGAGCTGTTGTTGAACTCCTTGGGAAGAGACGAGGGCAGATGTTTGATATGGAAGGAGTTGGATCGGAGGGAACTACATTACTCAAATACAAGATCCCAACTCGTGGCCTCCTTGGATTACGGAATGCAATTTTAACTGCTTCCCGAGGGACAGCTATTCTCAATACTATCTTTGATAGCTATGGACCCTGGGCTGGTGACATGAGTACCCGGGATCAAGGCTCACTGGTTGCTTTTGAGGATGGAACAAGTTCTTCTTATGCAATCGCTAGTTCACAGGAAAGGGGACAGGTGTTTATTGGTCCTGGAGTGGATGTTTATAAAGGTCAAATTGTTGGCATCCATCAGCGACCTGGGGACTTGTCATTGAATGTTTGCAAGAAAAAGGCTGCAACAAACATACGTTCCAACAAGGAACAAACAGTGATTCTTGATACACCCTTGGATTATAGTCTTGATGACTGCATCGAGTACATACAAGAAGATGAACTAGTAGAGGTTACTCCCCAAAGTATTCGAATGTGCAAGAATCCAAAGCTTCAGAAGAAAACAAGGTAG 2058 0.4232 MEKISLTTTAHNCFFTSTLPKTSSFSSSLFASNQLLGLPLSSSSSSSSASTNPRLRLVSRNAASCRTVKCSVSEAAEPLTASERRQLKRRGDVRNIAIVAHVDHGKTTLVDAMLKQTKVFRDNQFVQERIMDSNDLERERGITILSKNTSVSYHDTKINIIDTPGHSDFGGEVERILNMVEGILLVVDSVEGPMPQTRFVLKKALEFGHSVVVVVNKIDRPSARPDFVVNSTFELFIELNATDEQCDFQVIYASGIKGQAGLSPENLAEDLGPLFESIIRCIPGPRIDKDGALQMLVTNIEYDEHKGRIAIGRLQAGVLEKGMDVKVCTSEDSCRYGRVSELYVYDKFSRVPAESVEAGDICAVCGISDIQIGETIACKVSGKPLPSIKVEEPTVKMAFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMKVEDGETADTFIVSGRGTLHITILIENMRREGYEFMVGPPKVINKKVNDKLLEPYEIATVEVPEEHMGAVVELLGKRRGQMFDMEGVGSEGTTLLKYKIPTRGLLGLRNAILTASRGTAILNTIFDSYGPWAGDMSTRDQGSLVAFEDGTSSSYAIASSQERGQVFIGPGVDVYKGQIVGIHQRPGDLSLNVCKKKAATNIRSNKEQTVILDTPLDYSLDDCIEYIQEDELVEVTPQSIRMCKNPKLQKKTR* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1726 685 CDD BipA_III 393 471 - -
Amo12g1726 685 Gene3D Translation factors 287 387 - -
Amo12g1726 685 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 132 147 IPR031157 -
Amo12g1726 685 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 293 IPR027417 -
Amo12g1726 685 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 69 685 - -
Amo12g1726 685 PANTHER BNAC09G43450D PROTEIN 69 685 - -
Amo12g1726 685 SUPERFAMILY EF-G C-terminal domain-like 391 475 IPR035647 -
Amo12g1726 685 CDD BipA_TypA_C 486 565 IPR035651 -
Amo12g1726 685 SUPERFAMILY EF-G C-terminal domain-like 486 600 IPR035647 -
Amo12g1726 685 Pfam Elongation factor Tu GTP binding domain 93 283 IPR000795 GO:0003924|GO:0005525
Amo12g1726 685 CDD BipA_TypA_II 293 386 - -
Amo12g1726 685 PRINTS GTP-binding elongation factor signature 95 108 IPR000795 GO:0003924|GO:0005525
Amo12g1726 685 PRINTS GTP-binding elongation factor signature 139 147 IPR000795 GO:0003924|GO:0005525
Amo12g1726 685 PRINTS GTP-binding elongation factor signature 159 169 IPR000795 GO:0003924|GO:0005525
Amo12g1726 685 PRINTS GTP-binding elongation factor signature 211 220 IPR000795 GO:0003924|GO:0005525
Amo12g1726 685 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 91 286 IPR000795 GO:0003924|GO:0005525
Amo12g1726 685 Gene3D - 91 286 IPR027417 -
Amo12g1726 685 Gene3D bipa protein 571 678 IPR042116 -
Amo12g1726 685 Pfam Elongation factor Tu domain 2 307 376 IPR004161 GO:0005525
Amo12g1726 685 Gene3D - 477 570 - -
Amo12g1726 685 SUPERFAMILY Translation proteins 239 379 IPR009000 -
Amo12g1726 685 TIGRFAM small_GTP: small GTP-binding protein domain 94 242 IPR005225 GO:0005525
Amo12g1726 685 Gene3D Elongation Factor G (Translational Gtpase), domain 3 394 677 - -
Amo12g1726 685 Pfam Elongation factor G C-terminus 484 568 IPR000640 -
Amo12g1726 685 CDD TypA_BipA 92 285 - -
Amo12g1726 685 TIGRFAM TypA_BipA: GTP-binding protein TypA/BipA 93 682 IPR006298 GO:0005525
Amo12g1726 685 SMART EFG_C_a 483 572 IPR000640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1726 Amo-Chr12 81959240 81967507 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1726 93 220 Eukaryotic Initiation Factors Gene Family AT3G22980 43.846 3.30e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1726 K06207 - gmx:100785222 1160.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g1726 12 81959240 81967507 Amo12g1726 12 81959240 81967507 ECH