Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1664 ATATTCCCAACAAAGAAGGCTCACTTCCCAGCCCACCCACAACCCACGCTTCCCCCCTGTGCCAACGTCCTACTAGCCCCCCAAGTGGGAAAAAAAAATTTTTCACCACACCCGTCAACCCGTGCACCGTGCAGCCCGGCAAAGGTCACCGCGATCACGTCCTGTGCAGCTCCTGCAGCCCAAGGCCTCCACCATTGCAGTCCCTGCAGCCCAAGACCTCCACCTATCACAGTCATTTTAATGGAGCATAATTCCGTTGAACCGAGTTGTCTCGTGCCAGATTCTTTCACTGGCGAGTTGTTCGACGGAGAAAAATGTACAGAAATTACTGAGTTGGGATGTGATGACATGGAACTTGTTGATGAGACCATAGTTGCCTTGCCTGACGATAAAATACCAATAGTTGGAATGCGGTTTGAGTATTTGAAGTTGGCCCATGATTTTTATGCGACCCATGCAAAAAAAGTTGGTTTCATAAGTAAGATACGGGCCACAAATTTTGATAGGATGACAAAGCAACCGATCAACCAATCTATCCATTGCAATCGGGAGGGTTTCTGGGCATCTCGTGTCAAGGCACCCAGACGGAAGAACACAATGGCAGGTGTGGGATGCAGAGCAAGAATATATACAAAATTCGACAGGGAAAATCATGATTGGATCTTGTTGAAGGTTGAACTAAATCACTCGCACCCGTGTTCAACTAAGAAGGCGGTGCACTACCACGAGAACAGGGAGTTAACAATGCATGTGAAGTGTATCATTAAGTTCGTCCACGAGTTCGACAATGTCCTAGGAACGAAGGAGCAGAAGGAATTGGAGGACGATGCTGCAGACTCGAGAGGTCTAATCCCATGTTCAACTAGATCAGCCATCGAGAGACGATTTCAAAAAGAGTATACCAACGAGATGTTTAGAGATGTCCAAATGGAATTTGGCAAGAAGGCTGATTGCACTATTCGTGCCATGGATGAACAGGGTGACTCGGCTTGGGTAAAGGTGGAAGAGGAAATACTAGTCTATCAAACGACCCGTTATGTTACGTTTGACGTCCATTTTCACCGTTCGACTCACAAGGTTCGATGCAGACATCTGCATAATGTTCTGGAGGATACAAGGGCCAAGCTAGTAGATTACCGTGGCAGGATGCAAAATAACACCGTCCCTACTGCACACAATAGCATCGTCACAGTCCCTTCAACCATTTTTGGCACAGCGGACATTCAGGCCCCATCAAAGGTAACCACTAAGGGTCGTCCAAAAGGCAAAAGGCTAGGATATGAGTTGGATAAATCAATCAAAAAATCCATGCAGAGAAAGCGGAAGAGTTTACGCAACGATAATCGTTTAGAATCTACTGCAAATCAAGATTCGGAGGCTTCCGCTCAGCAGATTGCTACGCAAGGACTTGGTGGATTCATGTCGCTGTTAAACTCCTTCGACAATACCTAG 1452 0.4669 IFPTKKAHFPAHPQPTLPPCANVLLAPQVGKKNFSPHPSTRAPCSPAKVTAITSCAAPAAQGLHHCSPCSPRPPPITVILMEHNSVEPSCLVPDSFTGELFDGEKCTEITELGCDDMELVDETIVALPDDKIPIVGMRFEYLKLAHDFYATHAKKVGFISKIRATNFDRMTKQPINQSIHCNREGFWASRVKAPRRKNTMAGVGCRARIYTKFDRENHDWILLKVELNHSHPCSTKKAVHYHENRELTMHVKCIIKFVHEFDNVLGTKEQKELEDDAADSRGLIPCSTRSAIERRFQKEYTNEMFRDVQMEFGKKADCTIRAMDEQGDSAWVKVEEEILVYQTTRYVTFDVHFHRSTHKVRCRHLHNVLEDTRAKLVDYRGRMQNNTVPTAHNSIVTVPSTIFGTADIQAPSKVTTKGRPKGKRLGYELDKSIKKSMQRKRKSLRNDNRLESTANQDSEASAQQIATQGLGGFMSLLNSFDNT* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1664 483 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 253 364 IPR031052 GO:0006355
Amo12g1664 483 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 112 242 IPR031052 GO:0006355
Amo12g1664 483 MobiDBLite consensus disorder prediction 435 461 - -
Amo12g1664 483 Pfam FAR1 DNA-binding domain 147 234 IPR004330 -
Amo12g1664 483 PANTHER OS03G0843700 PROTEIN 112 242 - -
Amo12g1664 483 PANTHER OS03G0843700 PROTEIN 253 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1664 Amo-Chr12 78173212 78178542 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo12g1664 FAR1 3.8e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1664 - - aip:107627325 307.76