Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1663 ATGTCTCTTGAAGAGTCTCTAAGATCTCTCTCCCTTGACTACCTCAACCTGCTCATCAACGGCCAAGCCTTCAGCGACGTCACTTTCCAAGTCGAAGGCCGACTCGTCCACGCCCACCGCTGCATCCTCGCAGCACGCAGCCTATTCTTCAGGAAATTCTTTTGCGGCCCGGACCCTCCGTGCGGGCTTGACCCGGTGGGCGCTTCCAGGGGAAGCCCGGGCCCGACCACAACGGGCTCGTCGAGGTCCCCGGCGGGGGTGATCCCGGTGAACTCTGTCGGTTACGAGGTGTTCTTGCTGCTTCTTCAGTTCCTTTACAGCGGCCAGGTGTCCATCGTGCCTCAGAAGCACGAGGCCCGGCCCAATTGCGGTGAGAGGGGTTGCTGGCACACGCATTGCACCTCAGCCGTTGATCTCGCCCTCGACACTCTCGCTGCCGCTAGATACTTTGGCGTTGAACAGCTTGCATTGCTCACTCAGAAACAACTAGCAAGCATGGTAGAGAAAGCGTCAATTGAAGATGTGATGAAGGTACTGTTGGCATCGAGAAAGCAAGAAATGCAGCAGTTATGGACAACGTGCTCCCACCTAGTGGCCAAGTCAGGCCTCCCACCTGAAGTCCTTGCCAAGCACCTCCCAATCGACCTCGTTGCCAAGATCGAAGAGCTCCGCCTCAAATCCTCCCTCTCTCGCCGCTCCCTCATCCCATCTCCATACCACCACCCTCACCACCACCACCACCATGATCTCACGGTCGTCGGGGATATCGAGGACCAAAAGATTCGCCGGATGCGACGGGCCCTCGATTCCTCTGACGTAGAGCTCGTAAAGCTCATGGTGATGGGCGAGGGTCTCAACTTGGACGAGGCTCTCGCCCTTCACTATGCAGTGGAGAATTGCTCCAGGGAGGTCGTCAAGGCCCTTCTAGAGCTCGGCGTTGCGGACGTCAACTTCCCGGCTGGACCAGCAGGGAAGACGCCGCTCCACGTAGCTGCCGAAATGGTGTCCCCCGACATGGTGGCCGTTCTACTCGACCACCACGCCGATCCTAACGTGCGTACTGTGGACGGCGTCACCCCTCTGGATATCCTCAGAACCCTAACCTCCGATTTCCTCTTCAAAGGTGCGGTTCCTGGTCTCACACACATTGAACCCAACAAGCTAAGGCTGTGTTTGGAGCTCGTTCAATCAGCGGCACTCGTTCTTTCGCGAGAAGAAGGGAATGCAAACCCTCCTTCTTCAGCAACAGCAATATATCCTCCTCCACTTAGCACCGATCATCATCAGGACCATAGTGGGAACTTGGATTCGAGACTGGTGTACCTTAACCTTGGTGCTTCCGGTTCCGGACAAATGGGTAGTGGTGGTGGTGACGAAGATAGTAGCAGCCACAGTAGCCATAACCAGAGAGAAGCCATGAACCGTCATGGGTCGCAAGGTGGTGGATGTGACCCAACAATGTACCACCATCATCACTCTCATCATGACTACTAA 1494 0.5622 MSLEESLRSLSLDYLNLLINGQAFSDVTFQVEGRLVHAHRCILAARSLFFRKFFCGPDPPCGLDPVGASRGSPGPTTTGSSRSPAGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEARPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQEMQQLWTTCSHLVAKSGLPPEVLAKHLPIDLVAKIEELRLKSSLSRRSLIPSPYHHPHHHHHHDLTVVGDIEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGVADVNFPAGPAGKTPLHVAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGNANPPSSATAIYPPPLSTDHHQDHSGNLDSRLVYLNLGASGSGQMGSGGGDEDSSSHSSHNQREAMNRHGSQGGGCDPTMYHHHHSHHDY* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1663 497 Gene3D - 255 371 IPR036770 -
Amo12g1663 497 SMART ANK_2a 323 352 IPR002110 GO:0005515
Amo12g1663 497 SMART ANK_2a 288 318 IPR002110 GO:0005515
Amo12g1663 497 Gene3D Potassium Channel Kv1.1; Chain A 3 200 IPR011333 -
Amo12g1663 497 SMART BTB_4 25 167 IPR000210 GO:0005515
Amo12g1663 497 Pfam Domain of unknown function (DUF3420) 202 265 IPR024228 -
Amo12g1663 497 MobiDBLite consensus disorder prediction 447 462 - -
Amo12g1663 497 Pfam Ankyrin repeats (3 copies) 271 353 IPR002110 GO:0005515
Amo12g1663 497 MobiDBLite consensus disorder prediction 405 433 - -
Amo12g1663 497 MobiDBLite consensus disorder prediction 446 497 - -
Amo12g1663 497 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 492 IPR044284 GO:0099402
Amo12g1663 497 PANTHER REGULATORY PROTEIN NPR5 1 492 - -
Amo12g1663 497 Pfam BTB/POZ domain 16 116 IPR000210 GO:0005515
Amo12g1663 497 ProSiteProfiles BTB domain profile. 25 114 IPR000210 GO:0005515
Amo12g1663 497 ProSiteProfiles Ankyrin repeat profile. 323 355 IPR002110 GO:0005515
Amo12g1663 497 SUPERFAMILY Ankyrin repeat 282 366 IPR036770 -
Amo12g1663 497 ProSiteProfiles Ankyrin repeat region circular profile. 323 353 - -
Amo12g1663 497 CDD BTB_POZ_NPR_plant 8 167 - -
Amo12g1663 497 SUPERFAMILY POZ domain 9 165 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1663 Amo-Chr12 78091505 78097474 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Amo12g1663 BTB 1e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1663 K14508 - zju:107433767 731.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g1663 12 78091505 78097474 Amo02g1799 02 57123048 57128860 hybridization
Amo16g0333 16 5127942 5130861 Amo12g1663 12 78091505 78097474 PCT
Amo12g1663 12 78091505 78097474 Amo16g0333 16 5127942 5130861 PCT