Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1611 ATGGATCACAGAAACAATCCCAAGGACTCGCTCTCCTATTCCAATCTCTTCAATCTCGAGCCTTTGATGAACTTTCAACTTCCACAACGGGATAATGATTTTGGTTATTACGGGAATAGTAGTCAGGACGATGAGAGCAGAGATAGCCGAGGTGGTGGGGCAATGGCAAGTCACAGTAATGGGAATGTGAATGCGAATGGAAGGGAGGTAAATTTGTTGAAGAGAGCATGGTCTCAAAACAGTGACGAGGAGGAAAGGAGTCGGTTTTATGGAACGTGTATCACAGAGGAGCGATATAGATCGATGCTTGGAGAGCATGTCCAAAAATACAAGAGGAGGTTCAAGGACACCTCATCTACTCATGCCCAAAATCAGGTTGCTGTTCCACCTGTTCAAAGTAGCAGTGCCTCAAAAGCTCGAAAGTCTGGGAATGATCACTATGGAGGACTGCATGCTGCAGAGATTGCATCTGAATGGCTATATGATTCCAATTCTCAGAAACCAGGAAACTACCATGATGCTAATTTCCTGCAGCGATATGCCTCTGATAGGACTATGTATGAACCTGCTTCTTTGGACATTACTGATGGTATCTCTTATAAGATCCCTCCAAAATATGATAAGCTAGCTTCAATGCTGAACCTGCCAAACTTCTCAGATATCCATGTAGATGAATTTTACTTAAAGGGTACCTTGGATTTGGGGTCCTTGGCTGCAATGATGGCTACTGATAAAAGGTTCATGACTACAAACCGAGGAGGCATGGGGGAGCCTATGTCCCAATATGACTCACTTCAGGCACGCTTGAAGGCCATGTCCGCTTCTAATTCACCTCATAAGTTCAGTCTGAAAGTGTCCAATGTCGGTTTAAATTCCTTCATCCCAGAGGGGGCAGCTGGAAACATAAAGCGATCTATTTTGTCTGAGGGTGGTGTATTGCAGGTTTATTATGTTAAGGTTTTGGAAAAAGGTGATACTTATGAGATCATTGAGCGAAGCCTACCTAAGAAGCAAAAGGTGAAAAAAGATCCTGCTTTGATTGAGAAGGAGGAAAGGGATAGAATTGGTAAGATTTGGGTAAACATTGTCAGAAGAGACGTTCCAAAACATCATAGGAATTTCACAATTTTTCATCGAAAGCAACTGATGGATGCCAAGAGGTTCTCAGAGAATTGTCAAAGAGAGGTTAGAATGAAAGTTAGTAGATCACTTAGATGGACTCGGGGTGCCAGCATTCGCACCCGCAAACTAGCTAGAGACATGTTGTTTTTCTGGAAACGAGCTGATAAGGAGATGATTGAATTGAGAAAAAGAGAGGAAAAAGAAGCTGCTGAAGCATTGAGGCGTGAACAGGAGCTTCGAGAAGCTAAGAGGCAACAGCAAAGGCTTAATTTTCTCATACAACAAACTGAGCTCTACAGTCACTTCATGCAGAACAAATCAAGCTTATTATCTTCAGAGGCTTTACCAATGGAAGATGAAAAAGCAGATGATCAAGATGCACTTTTTGACTCTTCAGATGCTGGCCCAATTGAGGATGATCCTGAAGAGGCTGAATTGAAGAAGGAAGCTTTGAAGGCTGCTCAAGAAGCAGTCTCCAAACAAAGAAAGTTGACAAGTGCTTTCGACAGTGAGTGCCTGAGGCTGCGCCAGGCTGGTGAAGCTGATCCACTTTCACAGGAGGTAGCAGGAGCGAGTGACATTGATTTGCAAACTCCCTCAACTATGCCTGTGGCATCTACAGTTCAGACACCAGAATTATTTAAAGGTTGTCTAAAAGAATATCAGCTAAAAGGTCTTCAGTGGCTTGTTAATTGTTATGAGCAGGGTTTAAATGGCATACTTGCTGATGAGATGGGACTTGGAAAGACAATTCAGGCTATGGTATTTTTGGCCCATTTAGCTGAGGAGAAAAATATATGGGGGCCTTTTCTGGTTGTTGCACCTGCATCTGTTTTAAACAATTGGAATGAGGAACTTGAGGACGCTAAATTCCACATTGTCATCACTAGCTATCAGCTGTTAGTACAAGACGAGAAGTTTTTTCGCCGTGTGAAATGGCAGTACATGGTTTTAGATGAGGCTCAAGCAATAAAAAATTCAACCAGCATAAGATGGAAGACACTCCTTAGCTTTAATTGTCGGAATCGCCTTCTTCTTACTGGCACACCTATTCAGAATAATATGGCAGAGCTGTGGGCTCTTCTGCACTTCATTATGCCAACTTTATTTGATAGCCATGAGCAGTTTAATGAGTGGTTTTCAAAAGGCATTGAGAACCACGCAGAACATGGTGGCACCTTGAATGAGCATCAACTGAATAGATTGCACTCAATTCTGAAGCCTTTCATGTTGCGGCGCGTTAAAAAGGATGTAGTTTCTGAGCTGACTAAGAAAACTGAGGTTATGGTGCATTGCAAGCTGAGTTCTCGGCAGCAGGCTTTCTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAACTTTTCGATAGTAATCGTGGGCAACTCAACGAGAAGAAAATCCTGAATCTAATGAATATTGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAGTTGTTTGAAAGGAGTGAGGGTAGCACATACTTCTATTTTGCAGAGATTCCAAATTCCCTTCCACCTCCCCCATTTGGGGAGTTGGAGGACATATACTATCCTGGAGGTCACAACCCCATATCATATGAGATGCCAAAACTTGTCTACCAAGAGATTATGCAAAGATCTGAGACTTTCTGTTCGACTGTTGGTCATGGTGTCTGCAGAGAATCTTTTCAGAAACATTTCAACATTTTTACACCGGAAAATATTTATCGCTCTATGATCTCAGAAGGTGTGGTTGTTAATAGCGGAAACTTTGGTTTTACTCGTTTGGTGGATTTGTCTCCACAAGAGGTGACATTTCTGGCCAGTAGTTCTTTCTTGGAGAGACTATTGTTTTCTATGATGAGATGGGAACGTAAATTCCTTGATGAATTTATAGACTTTCTTATGGAGACCACAGTAAGTGATCCTGAATGTAGTTACCTGGAAAAAGGAACAGTGAGAGCTGTTACTAGAATGTTATTATTGCCATCAAGATCTGAGGCTCAGTTTCTTGAACGAAGGTTTGCAACCGGGCCCACCTGTGATCCTTTTGAGGCTTTGGTCATCTCCCATCAGCATAGACTTTTATCCAATGCAAGGCTTCTTCATGCAGCTTACACATATATCCCACCGACTAGAGCTCCACCAATTGCTGCTCATTGCCCAGATCGTAACTTCTCCTATAAAATGATTGAAGAATTGCACGATCCTTGGGTTAAGAGGTTGTTTGTAGGATTTGCGCGTACATCTGAATCTACTGGTCCTAGAAAGCCTGTTCGTTCTCCTCATCATTTAATTGAAGAGATTGATTCTGAACTACCTATTTCACACCCTGCACTTAAGTTCACACATGAAGTTTTTGGCTGTTCACCTCCGATGCATAATTTTGACCCAGCAAAGTTGCTCACTGACTCTGGGAAGCTTCAAACACTTGATATACTATTGAAACGCTTGCGAGCAGGAAATCATCGTGTTCTTTTGTTTGCTCAGATGACTAAGATGCTGAATATTTTGGAGGATTATATGAACTATAGAAAATATAAGTATTTTCGACTTGACGGGTCATCTACTATTCAGGATCGCAGAGACATGGTCAAAGACTTCCAGGACAGGAGTGACGTATTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTAGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTATGAAAGTGACTGGAATCCAACGTTGGATCTGCAGGCAATGGATAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATACTTCTTAGAGCAAGTCAGAAAAGTACTGTGCAGAACCTTGTCATGACTGGTGGTTCTGTTGGAGGTGATCTTTTAGCTCCAGAGGATGTCGTATCTTTGCTTTTGGATGATGTCCAACTTGAACAGAAATTAAAGGAAATCCCGATTCAGGTAAAGGATAAGGAAAAGAAAAAGAAACCAACTAAGGGTATACGTGTAAATGAAGATGGTGATGCATCTCTGGAGGATCTAACAAACTCTACAGCCCAGGGTACTACAGATTTTGATCTTCCGATGGACCCAGAGGGATCAAACGCCAGTAATAAAAAGAGAAAAGCTGCTTCCAGACCAAGGAATTCTCAAAAGCCAAGTGAATCTGGCATTATGGCTATAGATTATGAATTGGATGATAACCACCTAACTACTGAACCAGTGGGCCACAAACCAAAGAGACCCAAAAGGATGAAGAATGTAAATGAAAAGTTTGAAGAGTCTTTTACTTCATCGGCTACCATATTCCCAGAGAAGACTTAA 4434 0.4177 MDHRNNPKDSLSYSNLFNLEPLMNFQLPQRDNDFGYYGNSSQDDESRDSRGGGAMASHSNGNVNANGREVNLLKRAWSQNSDEEERSRFYGTCITEERYRSMLGEHVQKYKRRFKDTSSTHAQNQVAVPPVQSSSASKARKSGNDHYGGLHAAEIASEWLYDSNSQKPGNYHDANFLQRYASDRTMYEPASLDITDGISYKIPPKYDKLASMLNLPNFSDIHVDEFYLKGTLDLGSLAAMMATDKRFMTTNRGGMGEPMSQYDSLQARLKAMSASNSPHKFSLKVSNVGLNSFIPEGAAGNIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPALIEKEERDRIGKIWVNIVRRDVPKHHRNFTIFHRKQLMDAKRFSENCQREVRMKVSRSLRWTRGASIRTRKLARDMLFFWKRADKEMIELRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSSLLSSEALPMEDEKADDQDALFDSSDAGPIEDDPEEAELKKEALKAAQEAVSKQRKLTSAFDSECLRLRQAGEADPLSQEVAGASDIDLQTPSTMPVASTVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLVVAPASVLNNWNEELEDAKFHIVITSYQLLVQDEKFFRRVKWQYMVLDEAQAIKNSTSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTKKTEVMVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKKILNLMNIVIQLRKVCNHPELFERSEGSTYFYFAEIPNSLPPPPFGELEDIYYPGGHNPISYEMPKLVYQEIMQRSETFCSTVGHGVCRESFQKHFNIFTPENIYRSMISEGVVVNSGNFGFTRLVDLSPQEVTFLASSSFLERLLFSMMRWERKFLDEFIDFLMETTVSDPECSYLEKGTVRAVTRMLLLPSRSEAQFLERRFATGPTCDPFEALVISHQHRLLSNARLLHAAYTYIPPTRAPPIAAHCPDRNFSYKMIEELHDPWVKRLFVGFARTSESTGPRKPVRSPHHLIEEIDSELPISHPALKFTHEVFGCSPPMHNFDPAKLLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVKDFQDRSDVFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLEQKLKEIPIQVKDKEKKKKPTKGIRVNEDGDASLEDLTNSTAQGTTDFDLPMDPEGSNASNKKRKAASRPRNSQKPSESGIMAIDYELDDNHLTTEPVGHKPKRPKRMKNVNEKFEESFTSSATIFPEKT* 1478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1611 1477 MobiDBLite consensus disorder prediction 33 65 - -
Amo12g1611 1477 Pfam SNF2-related domain 607 661 IPR000330 GO:0005524|GO:0140658
Amo12g1611 1477 Pfam DNA-binding domain 354 481 IPR020838 GO:0003677
Amo12g1611 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 789 1355 IPR027417 -
Amo12g1611 1477 PANTHER CHROMATIN-REMODELING ATPASE INO80 661 1463 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Amo12g1611 1477 PANTHER CHROMATIN-REMODELING ATPASE INO80 17 660 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Amo12g1611 1477 ProSiteProfiles DBINO domain profile. 358 483 IPR020838 GO:0003677
Amo12g1611 1477 SMART helicmild6 1204 1287 IPR001650 -
Amo12g1611 1477 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1178 1362 IPR001650 -
Amo12g1611 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 574 787 IPR027417 -
Amo12g1611 1477 Pfam SNF2-related domain 663 861 IPR000330 GO:0005524|GO:0140658
Amo12g1611 1477 Coils Coil 430 469 - -
Amo12g1611 1477 MobiDBLite consensus disorder prediction 1380 1394 - -
Amo12g1611 1477 Gene3D - 1142 1393 IPR027417 -
Amo12g1611 1477 CDD SF2_C_SNF 1166 1298 - -
Amo12g1611 1477 Pfam Helicase conserved C-terminal domain 1178 1287 IPR001650 -
Amo12g1611 1477 SMART ultradead3 588 750 IPR014001 -
Amo12g1611 1477 MobiDBLite consensus disorder prediction 1462 1477 - -
Amo12g1611 1477 Gene3D - 663 796 IPR038718 -
Amo12g1611 1477 Gene3D - 565 662 IPR038718 -
Amo12g1611 1477 PANTHER HELICASE SRCAP-RELATED 661 1463 - -
Amo12g1611 1477 MobiDBLite consensus disorder prediction 118 146 - -
Amo12g1611 1477 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 604 742 IPR014001 -
Amo12g1611 1477 PANTHER HELICASE SRCAP-RELATED 17 660 - -
Amo12g1611 1477 MobiDBLite consensus disorder prediction 119 141 - -
Amo12g1611 1477 Gene3D - 797 866 IPR027417 -
Amo12g1611 1477 MobiDBLite consensus disorder prediction 1361 1379 - -
Amo12g1611 1477 MobiDBLite consensus disorder prediction 1361 1477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1611 Amo-Chr12 74069189 74081337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1611 684 860 RAD5 or RAD16-like Gene Family AT1G61140 26.230 5.35e-12 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo12g1611 SNF2_N 3.4e-45 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1611 K11665 - gmx:100780615 2317.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g1611 12 74069189 74081337 Amo12g1611 12 74069189 74081337 ECH