Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1600 ATGGATAACTATTTGAAGGAGTTCGAATTGGAACCGAAGGATCGTTCCATCGAAGCACTAAGTAGATGGAGATCTGCGGTCTCAGCCTGGGTCATCAAGAATCGCCGCAGGAGGTTCCGCAATGTTGTAGATCTCGTTAAACTAACACTCGCCGAGGAGAAGAAGAAGAAAATACAGCATAAACTAAGGAGCATTCGGGTTGCTGTCCATGTTCATCGGGCAAAAGATCTTTTAAAGAATGCTATTAGTTCAGCAGTTGAATACGAGCTATCGGAAAAGACAAGAGAATCTGGTTTCAGAATTGAACCAGATGATATAGCAACGCTTGTTTCTGCCCATGATCTAAAGAACTTTAAAAAAATCGGCAGAGCTGAAGGGATTGCGAGGAAACTCTCAGTCTCTGTGAACGATGGTGTTAGTCAAGATAGTATACATAATAGGCAACAAATTTATGGACTTAACCGCTACACGGAGAGACCTTCAAAATCTTTCTTGATGTTTGTTTGGGAGGCATTGCATGACTTAACACTAATCATTCTCATAGTTTGTGCTCTAGTTTCTATAGCTATAGGGCTTCCCACTGAAGGATGGCCAAAGGGTGTTTATGATGGTCTTGGTATCATACTTAGTGTGTTTTTGGTTGTTACTGTTACTGCTATTAGTGACTACCAGCAATCCTTGCAATTCAGGGATTTGGACAAAGAGAAGAAAAAGCTCTTTGTCCAGGTGACCAGGGATGGGAAGAGACAGAAGGTTTCTATTTACGATTTGGTAGTCGGAGATATTGTCCATTTGTCAACTGGTGATCAAGTTCCAGCTGATGGAGTTTTTGTAACTGGATACTCATTACTAATTGATGAATCAAGTTTGTCAGGTGAGAGTGAACCAGTAAATATAGATGAACAAAAACCTTTTCTTCTTGCGGGAACCAAAGTGCAGGATGGTCAGGGAAAGATGATAGTTACAACAGTTGGCATGAGGACTGAATGGGGGAAGTTGATGGAAACTTTAAGTGAGGGAGGTGAGGAGGAGACTCCATTGCAAGTGAAATTGCATGGAGTTGCAACAATTATTGGGAAAATTGGGTTGGCTTTTGCCGTGTTGACATTTATCGTGTTGACAATAAGGTTTCTTGTTGAGAAAGCAGTCTCTGGTGACTTTGGTAGTTGGTCTATGAATGATGCAATGAAACTGCTGGACTACTTTGCTATTGCAGTGACCATAATAGTTGTCGCAATTCCGGAAGGATTACCATTAGCTGTGACACTTAGTCTTGCTTTTGCAATGAAAAAATTAATGAATGACAAGGCACTTGTGAGACATCTTTCCGCATGTGAGACTATGGGTTCTGCAAGTTGCATTTGCACAGACAAGACAGGAACATTGACCACTAACCATATGGTTGTGAACAAGATTTGGGTATGCGAAAAAGAGGCCGAGATCAAAGGTAATGAGAGTGCAGAGAAGCTGAAAACAGAGATACCTGAGGAAGTAATGAACATCCTTTTGCAGGCTATATTTCAAAATACATCTTCTGAAGTAGTTAAGGATGAAACCGGTAATAACACAATATTGGGAACACCAACAGAATCAGCATTGTTGGAATTTGGTTTGCTCACAGGTGGTGATTTTGATGCACAGCGCAGTACCTATAAGATAATTAAGGTTGAGCCTTTCAATTCAGTTCGGAAGAAGATGTCTGTGCTTGTGAGTCTTCCTAATGGAGGAGTCAGAGCTTTCTGCAAAGGAGCATCAGAAATAATACTAAGAATGTGTGACAAAATTATTGATTCTAATGGAAATGCTGCTGATCTTCCTGAAGAACAGGCGAAAAAAGTTAATGATGTCATAAATAATTTTGCCTCTGAAGCTCTGAGAACTCTTTGTTTGGCTGTTAAAGATATAGACGCAACAGAAGGGGAAAGCAGTATCCCTGATCATGGCTATACTCTGATAGCAATTGTAGGAATCAAGGATCCTGTGCGGCCCGGGGTCAGGGAAGCTGTTCAAACTTGTTTAGCAGCTGGAATAACCGTCCGTATGGTGACCGGTGATAACATCAATACAGCTAGAGCCATAGCTAAAGAATGTGCTATACTCACCGAGGGTGGTGTAGCTGTAGAAGGACCAGAGTTTCGAAACTTGTCGCCGGAGCAAATGAGAGATATCATACCAAATATTCAGGTAATGGCACGTTCCCTACCGCTTGACAAGCACACCTTAGTATCCAATTTGAGGAATATGTTTGGTGAGGTTGTAGCTGTAACTGGTGATGGAACCAATGATGCTCCTGCACTGCATGAGGCAGACATTGGACTTGCCATGGGGATCGCTGGAACTGAGGTTGCCAAAGAAAATGCTGATGTGATTATAATGGATGATAACTTCACTACTATCGTTAACGTGGCCAAATGGGGACGTGCCATATACATAAACATACAAAAATTTGTGCAGTTTCAGCTAACTGTAAATATTGTTGCTCTGGTTATCAACTTTGTTTCTGCATGCATCACTGGATCTGCACCACTCACAGCTGTTCAGTTGCTTTGGGTAAATTTGATTATGGACACATTGGGTGCATTGGCTCTGGCTACTGAGCCTCCCAATGATGGACTAATGGAAAGACCCCCGTTGGAAGAAAAGCAAGTTTTATCACCAAACCAATGTGGAGGAAATTTTGGTCAGAGTTTGTATCAATTGATTGTCCTTGCACTTCTCATTTTGATGGGAAGAGGCTACTGGGACTTACTGGTTCAGATGCAACTCAAGTGCTCAACACTTTGA 2784 0.417 MDNYLKEFELEPKDRSIEALSRWRSAVSAWVIKNRRRRFRNVVDLVKLTLAEEKKKKIQHKLRSIRVAVHVHRAKDLLKNAISSAVEYELSEKTRESGFRIEPDDIATLVSAHDLKNFKKIGRAEGIARKLSVSVNDGVSQDSIHNRQQIYGLNRYTERPSKSFLMFVWEALHDLTLIILIVCALVSIAIGLPTEGWPKGVYDGLGIILSVFLVVTVTAISDYQQSLQFRDLDKEKKKLFVQVTRDGKRQKVSIYDLVVGDIVHLSTGDQVPADGVFVTGYSLLIDESSLSGESEPVNIDEQKPFLLAGTKVQDGQGKMIVTTVGMRTEWGKLMETLSEGGEEETPLQVKLHGVATIIGKIGLAFAVLTFIVLTIRFLVEKAVSGDFGSWSMNDAMKLLDYFAIAVTIIVVAIPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSASCICTDKTGTLTTNHMVVNKIWVCEKEAEIKGNESAEKLKTEIPEEVMNILLQAIFQNTSSEVVKDETGNNTILGTPTESALLEFGLLTGGDFDAQRSTYKIIKVEPFNSVRKKMSVLVSLPNGGVRAFCKGASEIILRMCDKIIDSNGNAADLPEEQAKKVNDVINNFASEALRTLCLAVKDIDATEGESSIPDHGYTLIAIVGIKDPVRPGVREAVQTCLAAGITVRMVTGDNINTARAIAKECAILTEGGVAVEGPEFRNLSPEQMRDIIPNIQVMARSLPLDKHTLVSNLRNMFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVIIMDDNFTTIVNVAKWGRAIYINIQKFVQFQLTVNIVALVINFVSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMERPPLEEKQVLSPNQCGGNFGQSLYQLIVLALLILMGRGYWDLLVQMQLKCSTL* 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1600 927 Gene3D - 170 914 - -
Amo12g1600 927 Pfam E1-E2 ATPase 241 433 - -
Amo12g1600 927 SUPERFAMILY HAD-like 454 861 IPR036412 -
Amo12g1600 927 Gene3D - 138 338 - -
Amo12g1600 927 PANTHER CATION TRANSPORTING ATPASE 6 912 - -
Amo12g1600 927 SMART Cation_ATPase_N_a_2 117 192 IPR004014 -
Amo12g1600 927 Gene3D - 465 660 IPR023299 GO:0000166
Amo12g1600 927 SUPERFAMILY Calcium ATPase, transmembrane domain M 123 916 IPR023298 -
Amo12g1600 927 Gene3D - 452 801 IPR023214 -
Amo12g1600 927 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 461 665 IPR023299 GO:0000166
Amo12g1600 927 Pfam Cation transport ATPase (P-type) 511 595 - -
Amo12g1600 927 PRINTS H+-transporting ATPase (proton pump) signature 613 631 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo12g1600 927 PRINTS H+-transporting ATPase (proton pump) signature 788 813 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo12g1600 927 PRINTS H+-transporting ATPase (proton pump) signature 756 772 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo12g1600 927 Gene3D - 15 77 - -
Amo12g1600 927 PANTHER CALCIUM-TRANSPORTING ATPASE 6 912 - -
Amo12g1600 927 SFLD p-type atpase 437 809 IPR044492 -
Amo12g1600 927 Pfam Cation transporter/ATPase, N-terminus 124 187 IPR004014 -
Amo12g1600 927 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 723 844 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo12g1600 927 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 207 377 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo12g1600 927 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 392 479 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo12g1600 927 SFLD C1.7: P-type atpase like 437 809 - -
Amo12g1600 927 Pfam Cation transporting ATPase, C-terminus 841 912 IPR006068 -
Amo12g1600 927 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 47 IPR024750 GO:0005516
Amo12g1600 927 ProSitePatterns E1-E2 ATPases phosphorylation site. 457 463 IPR018303 -
Amo12g1600 927 SUPERFAMILY Calcium ATPase, transduction domain A 240 336 IPR008250 -
Amo12g1600 927 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 114 915 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Amo12g1600 927 CDD P-type_ATPase_Ca_PMCA-like 146 877 - -
Amo12g1600 927 PRINTS P-type cation-transporting ATPase superfamily signature 455 469 - -
Amo12g1600 927 PRINTS P-type cation-transporting ATPase superfamily signature 756 775 - -
Amo12g1600 927 PRINTS P-type cation-transporting ATPase superfamily signature 653 664 - -
Amo12g1600 927 PRINTS P-type cation-transporting ATPase superfamily signature 286 300 - -
Amo12g1600 927 PRINTS P-type cation-transporting ATPase superfamily signature 780 792 - -
Amo12g1600 927 PRINTS P-type cation-transporting ATPase superfamily signature 675 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1600 Amo-Chr12 73655503 73669028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1600 65 916 Primary Pumps ATPases AT3G57330 70.375 0.0 1233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1600 K01537 - gmx:100785768 1407.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g1600 12 73655503 73669028 Amo12g1600 12 73655503 73669028 ECH
Amo16g0256 16 3855194 3865859 Amo12g1600 12 73655503 73669028 PCT
Amo12g1600 12 73655503 73669028 Amo16g0256 16 3855194 3865859 PCT