Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1574 ATGAACTCCAACAACACCACCTCCAATACTCAGTCAATGGTGACACCAACGCCAACTGCCACAACCGCCACCACCACCACTGCCACCGCCACTGATGCCTCTGCCAAGAAGGTCAGAAAGCCTTACACCATTACCAAGTCCAGAGAGAGCTGGACTGACGAAGAGCACGACAAGTTTCTAGAAGCTCTTCAGCTATTTGACAGAGATTGGAAGAAAATTGAAGATTTTGTAGGATCCAAAACAGTTATTCAGATCCGAAGCCATGCCCAAAAATACTTTTTGAAAGTTCAAAAGAATGGAACAGTAGCACATGTTCCTCCTCCTCGCCCTAAGCGCAAAGCCGCACATCCCTACCCACAAAAGGCATCAAAAAATGTTTTGATGGCACTGCCAGCATCCATTGCTTATGCTCCTTCGACAAATGCCCTTGCACCTGGGTATGCCACATGGGATGAAGCTTCTCTGCTGGTGAACACCGGATCAAATAAATCATTGACCTGTCAAGATGAACTCAGCAATCTTCATGGAAACGAAGCTGATATTGGATCGAAGGGGATAACACAGATTAGTAACAGCAGTCTTAATGGTGTCKGGAACTCAACTAGAAAGCTATTGTCTTCTGAGATACCAAAGCAAGGGAAACCAGCGCCAGTTATTCATGGTTTGCCAGATTTTGCCGAAGTTTACAGCTTCATTGGAAGTGTTTTTGATCCTGATACAAATAACCATGTCWAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGAATTTGAGCCGATGAAGAATGTATTATTGTCAACATATGATATCAATACCATGACAGTAGGAGTTACAGTAGGAGTTACAGCAGGAATTGATGTCAAGAAGCAACCGAATGACCTATCATGTCAAACTGTTTAA 951 0.4301 MNSNNTTSNTQSMVTPTPTATTATTTTATATDASAKKVRKPYTITKSRESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLMALPASIAYAPSTNALAPGYATWDEASLLVNTGSNKSLTCQDELSNLHGNEADIGSKGITQISNSSLNGVXNSTRKLLSSEIPKQGKPAPVIHGLPDFAEVYSFIGSVFDPDTNNHVXKLKEMDPINFETVLLLMRNLTVNLSSPEFEPMKNVLLSTYDINTMTVGVTVGVTAGIDVKKQPNDLSCQTV* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1574 316 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Amo12g1574 316 MobiDBLite consensus disorder prediction 1 33 - -
Amo12g1574 316 SMART sant 47 95 IPR001005 -
Amo12g1574 316 Gene3D - 51 98 - -
Amo12g1574 316 PANTHER PROTEIN REVEILLE 8 19 300 - -
Amo12g1574 316 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 46 95 IPR006447 GO:0003677
Amo12g1574 316 PANTHER SWI/SNF COMPLEX-RELATED 19 300 - -
Amo12g1574 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 97 IPR017930 -
Amo12g1574 316 ProSiteProfiles SANT domain profile. 46 99 IPR017884 -
Amo12g1574 316 MobiDBLite consensus disorder prediction 1 36 - -
Amo12g1574 316 ProSiteProfiles Myb-like domain profile. 43 93 IPR001005 -
Amo12g1574 316 CDD SANT 50 93 IPR001005 -
Amo12g1574 316 Pfam Myb-like DNA-binding domain 48 93 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1574 Amo-Chr12 70098419 70103177 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo12g1574 Myb_DNA-binding 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1574 - - adu:107474168 569.696