Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1571 ATGGCAAAAGGTGATGATGCTGTGAGAAGGAAGAAGAACAAAGCCATATGCAAAAAGCTCAGAAGAAAGAATGACTCTTCCACTGTCTCTGCCAAGGCAGCTGCTGCTATTGCCGCCAAGAAGCGCCGCAAGGCCGGTAAACGCCGCATGTGCCAGGGAATGTGCTTTAGTCTGCCTTCTCCTGATGATCCATTCAATGATCATCATGGGAAAGAGAAATTTAAAAGAAAAGCTCCTGGAAAGAAAAAACTCACCACAAAAGAAAAGGTTCCCCATAGAGAGGAGAGTGCAACTAAAAGGGAAAACACATTTGGTGGGAATATTTCTAAGAAATCAATTTGTTTGCAAGTGGAAAATCAGCCTGTCATTGAGGTGACCGACATGGCTGACCGTTGTGGTGGTGTGCAACAACGAAAATGTGAATTGTCAGAGTTGCCTTCTAAGTTTGTCTTTTTGTGTCTAAGTTCAATTGAAAATGCATTGCACCATGGTGATGCCTATTCTGATGGAGAGGATAACATTTTGTCTGTTGACACATGGGGATTAGAGTTTCTAAAGTGTTATTCTACAGGGAAAGATCTGATAGAAACCAGTGGAATCTCTGCCACTACTGAGCAAGTTGCATGGATTGTTTCTGGTGTAGCTGATACATTTGTGAGAAAAGAGAAGCAAGGCTTATCTTTTGCCAGTCCTTTCCTTTTATTCCTTGTACCTTCCCAAGAAAAAGCTTTACAGGTCAGAACAGTGTGCAAGCCTTTGAAATCACTAGGAATACATACTGTGAGTATTCATTCAGGTGCTACCTTAGATCATCAAATTCAAGGGTTGAAAAGTTGTGAACCTGAGTTTCTTGTTTCTACTCCAGAGAGATTAATGGAGCTTCTATCATTGAAGGCCATTGACATATCTGATGTCTCCATATTGGTTGTTGATGGGCTTAATACTGTTTGTACTGCTGGTTTCGCTGATACTATTAAATCCATCAAGTCATTTATTTCCAGCGATCCTCGTGTTTTGGTTTTCAATGATTCCTTTAACCATATGTCTATCCCAATGGTTCGGCATCTTCTAAATGGGTCAATCTGTAGACTCTCACTCAGTAATACAATTACCAGCCTAAGTTCATGCATTATCCAGTCTGTCCGGGTGTGCACATCAGATGAAGATAAGCTTCTTAGGAGCACTGAAGCCCTTGATCAATTTCGGAGCAGCTGTTCTCATAATTCAAACATGCTATATATCTTAAGGAAAGACATCAAGTGTAATAAGTTGGTAAAAACTCTCAAAGGAAGGGGTTGTTGCATTTCACTTGATTCTAATACTGCAAGCTCTAATGACAGAGTGGATTCAAACAGCAGATCAGGACCAGTGGTTTCTGCAATAGATTTGGAGCATCTCTCCACTGCAGAGATAGGGCGGTATGATGTTGTAGTCTTACCTAGTTTTGTACCATCCATTGACACTTACATCCATATTTTGACAAAGATGGCGCGCGAAAGTGTCAATGGTGTTCTGCACAGTTTCTTGACAGCAGAAGACGGAGAACTAGCTGGACAGCTCATCGGCATTCTTGAACAATGTGAGCAGGAAGTACCTGAAACCTTGCAAGATCTGCATCATAAATCAGAGATGAAAGAATGA 1641 0.4126 MAKGDDAVRRKKNKAICKKLRRKNDSSTVSAKAAAAIAAKKRRKAGKRRMCQGMCFSLPSPDDPFNDHHGKEKFKRKAPGKKKLTTKEKVPHREESATKRENTFGGNISKKSICLQVENQPVIEVTDMADRCGGVQQRKCELSELPSKFVFLCLSSIENALHHGDAYSDGEDNILSVDTWGLEFLKCYSTGKDLIETSGISATTEQVAWIVSGVADTFVRKEKQGLSFASPFLLFLVPSQEKALQVRTVCKPLKSLGIHTVSIHSGATLDHQIQGLKSCEPEFLVSTPERLMELLSLKAIDISDVSILVVDGLNTVCTAGFADTIKSIKSFISSDPRVLVFNDSFNHMSIPMVRHLLNGSICRLSLSNTITSLSSCIIQSVRVCTSDEDKLLRSTEALDQFRSSCSHNSNMLYILRKDIKCNKLVKTLKGRGCCISLDSNTASSNDRVDSNSRSGPVVSAIDLEHLSTAEIGRYDVVVLPSFVPSIDTYIHILTKMARESVNGVLHSFLTAEDGELAGQLIGILEQCEQEVPETLQDLHHKSEMKE* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1571 546 MobiDBLite consensus disorder prediction 84 100 - -
Amo12g1571 546 Coils Coil 541 546 - -
Amo12g1571 546 MobiDBLite consensus disorder prediction 62 100 - -
Amo12g1571 546 Gene3D - 222 370 IPR027417 -
Amo12g1571 546 Pfam DEAD/DEAH box helicase 229 332 IPR011545 GO:0003676|GO:0005524
Amo12g1571 546 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 ISOFORM X1 1 542 - -
Amo12g1571 546 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 356 IPR027417 -
Amo12g1571 546 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1571 Amo-Chr12 69527896 69538268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1571 234 538 Eukaryotic Initiation Factors Gene Family AT1G72730 20.938 8.01e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1571 - - gmx:100809099 705.286