Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1568 ATGGTGGCGCTCCTGCCCCCTGAGAGTCAGATAGCCATACCCCATCACCATCACTCCATGGATGCGCCTGACGAAGAACAGCAGCAGGTTTCGTCGAACTCCATCAAGAGCTGGGCCAAGCAGATTGAGGAGAGCTATCAGCTTCAGCTCCAGCTGGCACTTCGCCTCTCTTCGCAGTCTGCTTCTTCCGACAATCCCAATTTCCTTGACTTGCAACCCACCTCTTCCGATTCGGCCCTGGCAATGTCGCATCGTTTTTGGGTAAATGGTTGTTTGCAATACTCGGACAAAATTCTCGATGGCTTCTACCTAATCCATGGGGTGGATGCTTACACATGGTCGATAAGTTCTGATCTGCAGGATGTTGGTATAATTCCTTCATTTGAATCACTGATGTCAGTAGAACCTTGCGATGACTCGTCAATTGTAGTGGTTGCTATTGATAAATCCAAAGATCCTGGTTTGAGAGACCTGCAAAGTAGAGTAGTCAGTCTTTCAAGTAGCTGGAATTCTCCAAAATTTGCAGCTGTTCAGGTTGCAAATCTTGTTTATAGTAGGATGGGTGGTGGACGTTCAACTAAGGAAAATTTAGGCTCACAGTGGAAGGAGTGCGCCCAAAAACTAAAAAGCTGCCTGAATTCTGTCATTCTTCCGATTGGAAGCTTAGCTGTTGGTCTTTGTGTTCACCGAGCATTGCTGTTTAAAGTGTTAGCTGACTTAATTGACTTACCATGCCGAATTGCTAAGGGATGCAAGTATTGTAGCAGGGATGTTGGCGCTTCATGCATAGTGCAATTTGATTCTGACAGGGAGTATATGATTGATTTAGTTGAAAGGCCTGGCTCAGTGTGCCAGCCTGACTCTTTGCTGAACTCTGCATCATCAATGGTGGTCTCTTCACCATTATGTCACCCAAAGTTCAAGACAGTTGAAGCAGCTGGATATACTAAGACATTAGCCCAATCATTTTTCTTGGACAGTCAAGGATTGCACCATATATTTGATACAACATCAGGTGGTAAAATTAATCTTAGTGACAGAATGGATGTAAAAGAAACTAGAACTTCTAGTGCACACTATGCCCATGGGAATGACCACCTAGTTGCATCGGGTCTTAGTGCAGATGACTATGTTTCCGTTACTGAAACAAACCCGTCTGTAGTTGATCTTGGTGTGGAGGACCTAGACATTCCATGGAGTGAACTTGTTCTGAAGGAGAACATTGGGGCAGGATCATTTGGAACTGTCATTCGTGCAGATTGGCGTGGTTCTGATGTTGCTGTGAAGATTCTTAAGGTGCAAGATTTTGATTCTGAGCGAATAGAAGAGTTTCTGAAGGAGGTCTCCCTAATGAAGCGCATGCGGCACCCAAACATTGTACTTCTGATGGGTGCAGTATTTCAACCCCCAAGGTTATCTATAGTAACAGAATATTTATCAAGAGGCAGCTTGTATGAACTTCTGCGCATGCCTGGTGTTGGAATATCACTCAGTGAGATGCGTCGTTTAAGCATGGCTTATGACGTGGCAAGTGGAATGAATTATCTCCATCAAATGAGACCTCCCATTGTTCATGGAGATTTGAAGTCCCCAAATCTTTTGGTTGACAATACATACACTGTCAAGGTAGCTGACTTTGGCCTTTCACGAACAAAGGCAAATACATTCCTTTCATCTAAAACTGCCGCTGGGACACCTGAATGGATGGCGCCAGAAGTCATCCTAGGTAAACCATCAAATGAAAAATGCGATGTATTCAGCTTTGCTGTAATATTGTGGGAACTAGTTACCCTGGAACAGCCATGGAGACAGTTAAATCCTTCACAGGTTAGATTATTTACTCTGACATGGTCCTTTTTTTTAGGACGCATACAACCCCCCCCCCCCCCACCCTCCTTCCTTTCTCCTCCTCCTCCTCCTCTTCTGGGTGCAACCATTTTCCAGACCTTGCGCAACGTGGGATACTTTGCACTGGGCTGCCCCTTCAATGTATACATCAAAATTCAAATCATATATTTATGCTTTATTTCACGAATAGAATACTGTTAG 2049 0.4441 MVALLPPESQIAIPHHHHSMDAPDEEQQQVSSNSIKSWAKQIEESYQLQLQLALRLSSQSASSDNPNFLDLQPTSSDSALAMSHRFWVNGCLQYSDKILDGFYLIHGVDAYTWSISSDLQDVGIIPSFESLMSVEPCDDSSIVVVAIDKSKDPGLRDLQSRVVSLSSSWNSPKFAAVQVANLVYSRMGGGRSTKENLGSQWKECAQKLKSCLNSVILPIGSLAVGLCVHRALLFKVLADLIDLPCRIAKGCKYCSRDVGASCIVQFDSDREYMIDLVERPGSVCQPDSLLNSASSMVVSSPLCHPKFKTVEAAGYTKTLAQSFFLDSQGLHHIFDTTSGGKINLSDRMDVKETRTSSAHYAHGNDHLVASGLSADDYVSVTETNPSVVDLGVEDLDIPWSELVLKENIGAGSFGTVIRADWRGSDVAVKILKVQDFDSERIEEFLKEVSLMKRMRHPNIVLLMGAVFQPPRLSIVTEYLSRGSLYELLRMPGVGISLSEMRRLSMAYDVASGMNYLHQMRPPIVHGDLKSPNLLVDNTYTVKVADFGLSRTKANTFLSSKTAAGTPEWMAPEVILGKPSNEKCDVFSFAVILWELVTLEQPWRQLNPSQVRLFTLTWSFFLGRIQPPPPPPSFLSPPPPPLLGATIFQTLRNVGYFALGCPFNVYIKIQIIYLCFISRIEYC* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1568 682 Gene3D Phosphorylase Kinase; domain 1 395 480 - -
Amo12g1568 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 523 535 IPR008271 GO:0004672|GO:0006468
Amo12g1568 682 ProSitePatterns Protein kinases ATP-binding region signature. 408 429 IPR017441 GO:0005524
Amo12g1568 682 Pfam Ethylene-responsive protein kinase Le-CTR1 80 283 - -
Amo12g1568 682 SUPERFAMILY Protein kinase-like (PK-like) 381 618 IPR011009 -
Amo12g1568 682 CDD STKc_MAP3K-like 408 610 - -
Amo12g1568 682 Gene3D Transferase(Phosphotransferase) domain 1 481 643 - -
Amo12g1568 682 ProSiteProfiles Protein kinase domain profile. 402 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g1568 682 Pfam Protein tyrosine and serine/threonine kinase 403 610 IPR001245 GO:0004672|GO:0006468
Amo12g1568 682 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 378 610 - -
Amo12g1568 682 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 27 353 - -
Amo12g1568 682 SMART serkin_6 402 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g1568 682 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 378 610 - -
Amo12g1568 682 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 27 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1568 Amo-Chr12 69219030 69232856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1568 38 610 MAP Kinase Kinase Kinase AT5G03730 55.519 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Amo12g1568 PK_Tyr_Ser-Thr 6e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1568 K14510 - gmx:100807496 862.833