Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1552 ATGTCAAAGCACCAAGGGACAGCCTCAGTGCTTGAATATAGAAGGAGCATCCCCAATAATAACTGCACTAACAACATTACACTCTTAAACGGCTTTGATCACCTGAAGGTCCCTGTCCGAGCAAGGAGCAAGTGTCGTAGTAGGCCTCGCCTGGCTATTGCTGACGTCTCAAGTCATCAGTCCTGGTGGAGACTATCTAGTAGAGAAATTTCCGGAGTAGAAGTGATAAAAATCCCAACCATTGGGAGGAAATGTCAGCACTGTGGATCTGAAGAAACTCCACAGTGGCGATCAGGTCCGCTTGGGCCAAAAACACTTTGTAATGCCTGTGGGGTTAGGTTCAAGTCTGGTCGACTGGTCCCCGAGTACCGTCCTGCAACCAGCCCAACTTTTCGTCACGAGTTGCATTCTAATTCCCATAGGAAGATTATCGAGATGAGGAAGCAGAAGCAAATGGGAATGGTTTGA 468 0.4786 MSKHQGTASVLEYRRSIPNNNCTNNITLLNGFDHLKVPVRARSKCRSRPRLAIADVSSHQSWWRLSSREISGVEVIKIPTIGRKCQHCGSEETPQWRSGPLGPKTLCNACGVRFKSGRLVPEYRPATSPTFRHELHSNSHRKIIEMRKQKQMGMV* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1552 155 SMART GATA_3 79 129 IPR000679 GO:0006355|GO:0043565
Amo12g1552 155 ProSitePatterns GATA-type zinc finger domain. 85 110 IPR000679 GO:0006355|GO:0043565
Amo12g1552 155 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 81 142 - -
Amo12g1552 155 PANTHER GATA TRANSCRIPTION FACTOR 1 20 151 - -
Amo12g1552 155 CDD ZnF_GATA 84 132 IPR000679 GO:0006355|GO:0043565
Amo12g1552 155 Gene3D - 80 153 IPR013088 GO:0006355|GO:0008270
Amo12g1552 155 ProSiteProfiles GATA-type zinc finger domain profile. 79 115 IPR000679 GO:0006355|GO:0043565
Amo12g1552 155 Pfam GATA zinc finger 85 118 IPR000679 GO:0006355|GO:0043565
Amo12g1552 155 PANTHER GATA TRANSCRIPTION FACTOR 20 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1552 Amo-Chr12 68082713 68086086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1552 81 153 C2C2-Gata Transcription Factor Family AT3G24050 83.562 6.46e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Amo12g1552 GATA 4.7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1552 - - ahf:112727508 315.849