Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1548 ATGGTCTCAAAAATTAAGATGTCAAAAGGGTATTCTGTGATTGTACTCTTACTATTATTTTTATCTCTGATTCTTTGCACGGCCGAAGGGTTGAACGCAGAGGGGCAAATCCTCCTAGACCTCAAGAATGGTTTCCATGATAAGAATAATCTTTTGCGGAATTGGAACCCTGCTGATGAAACTCCATGTGAATGGTTAGGCGTAAATTGCTCTTATTATGAATATAATAATAGTAAAAGTCCAGTTGTCATGTCCCTTGATTTGAGTTCAATGGGTCTTTCTGGAATTTTAAATGGTAGTAGCATTGGAGGTTTGACTCACCTAACTTATCTCAATCTTTCTCACAATAAGTTGAGTGGAAAAATACCAAAGGAAATTGGCGATTGCTTGAATTTGGAGTATCTTTACTTGAACAATAACCAATTTCAGGGACCAATTCCTGATGAACTGGGGAATTTGTCTCGTTTGAGAAGCTTGAACATATGCAACAACAAACTCAATGGTGTTTTTYCAGATGAGTTTGGGAACTTGTCTTCATTGGTTGAATTGGTAGCCTATAGCAATTTTCTTGTTGGTCCCTTGCCTAGTACCATTGGGAAGCTCAAGAATCTTGTGACTTTCAGAGCCGGGGCRAATAACATTACCGGTTCACTGCCAAAGGAAATAAGTGGGTGCGCAAGCTTGATGTATCTCGGTCTTGCGCAAAATGATATATCAGGGGAGCTTCCAAGTGAGATTGGGATGCTTCAGAATTTAACAGAATTGATTCTATGGGACAATCAGTTATCAGGGCCTATTCCCAAAGAGATTGGGAATTTAACCAATCTTGAGATTCTTGCTTTGTATTGGAATGATCTTGTTGGACCTATACCTCCAGAGATTGGGAACCTCAAGTCATTGAAGTTTTTGTATCTATACAAAAACAATCTGAATGGAACCATTCCAAGGGAAATTGGGAACCTTTCTTCTGCTAGGGAAATTGATTTCTCAGAGAACTCTYTAGTAGGGTACATCCCATCCGAGCTGAGCAAAATCCGTGACCTGCGCTTGCTCTTTCTTTTCGAGAACCATTTAATTGGTGTCATACCGGATGAGCTCAGTAGCTTGAGGAATCTGTCAAGGCTCGACCTGTCWATGAATGGCCTTACYGGCTCGATTCCTTCAGGATTTCAATACTTGACTAATATGTCCCAGTTGCAGCTCTTTGACAACAAGTTGAGTGGTGTTATCCCTCAAGAACTTGGACTTCATAGTCCTCTTTGGGTGGTTGATTTCTCTGATAACAATTTGACAGGAACAATACCTCCTCATCTATGCTGGAATTCTCATTTGATGTTGTTGAACCTTCAATCWAACCGGTTTTATGGAAACATACCAAGAGGGATACTCAAGTGCAAGTCATTAGCGCAGATGCTTGTAGTTGGAAACATGCTTACAGGTGGCTTCCCTTCAGAACTCTGCAAACTGCCAAACTTCATCGCCATCGAGTTGAACGAAAACAAGTTCAGTGGTCCGATTCCTCCTGTGATCGCGAACTGCAGTAAATTACAAAGRCTSCACATAGCAAACAATTACTTCACACTGGAGTTACCTAAGGAAATTGGAAATCTTTCTCAGCTGGTGACCTTCAATGTTTCATCAAACCACTTCACTGGAACAATCCCATCCGAAATCTTTAGGTGCCAGAAGCTGCAAAGGCTGGATCTCAGTAAWAACAAGTTTATTGGTTCCTTGCCWAACAACATAGGAACACTTGAACATTTGGAGATTCTCAAACTCTCTGGCAATGAACTCTCTGGAAAAATCCCTGAAGAAATAGGTAATCTATCTCATTTGAACTGGCTGCAAATGGATGGCAATTTGTTTTCCGRCGAAATTCCGGCTCAGCTYGGTCGCCTCTCGACCTTGCAGATTGGAATGGATCTCAGTTACAATAATCTTTCTGGGAGAATACCATCTCAGCTCGGTAATCTCAATATGCTTGAGTATATCTATCTCAATAACAATCATTTGGATGGCGAAATTCCAAGCTCATTCGACCAGCTTTCRAGCTTGCTGGGATGCAATTTCTCATACAACAACCTCTCYGGACCAATACCTTCAGATAAGATCTTCCAAAATATGGCTGCAAGCAGTTTTCTTGGTGGTAACAACGACCTCTGYGGTAGACCTCTCAATGAATGCAACTCCGATCTGTCTTCTCGTGGTTTTCCTCCGGTTAGACATGAYGATTCTCGCCGTGCTAAAATAGTCATGATCGCTGCAGCCACCGTGGGCAGCGTTTCTCTCATCTTAATTTTAGTTATTTTATATGTTATGAGATGGCCGTTCAATTCCACGAGTTCCTTGAGAGACACGGAATCTCCCTGCCTTGATTCGGATATCTATTTTCCTCCGAAGGACGGCTTCACATTCCAGGATCTTGTTGAGGCAACGAAAAGRTTTCATGAGAGCTATGTGATTGGCAGGGGAGCCTGTGGGACGGTTTACAARGCGGTGATGAAGTCCGGGAAGACGATTGCAGTTAAGAAGTTAGCATCAAACAGGGAAGGGAACAACATTGAGAATAGTTTTAGAGCTGAGATACTGACACTRGGGAAGATTCGGCATAGAAACATTGTGAAGCTTTATGGATTCTGCTATCACCAAGGCTCCAATCTGCTGCTTTATGAGTACATGGAGAGGGGAAGCTTAGGTGAAGTGTTGCATGGTTCTGCTACCAATTTGGAGTGGCCAATTCGGTTCATGATTGCTCTTGGTGCTGCTGAGGGTCTTGCCTACTTGCACCATGATTGCAAGCCAAAGATTATTCACCGGGATATAAAATCTAATAACATTCTTCTTGATGAAAATTTTGAGGCTCATGTTGGTGAYTTTGGGTTAGCCAAAGTGATTGACATGCCACAATCAAAATCCATGTCTGCAGTTGCTGGATCTTATGGCTATATTGCTCCTGAATATGCATACACCATGAAGGTAACAGAAAAGTGTGACATTTATAGCTATGGCGTTGTGCTCTTGGAACTGCTAACAGGTAGAGCACCGGTTCAACCATTGGAGCAAGGTGGTGATCTTGTGACATGGGTTAGAACCCATATTCGGAGCCACAACAACGTGTTGACGCAGGGAATACTCGACAATCGCATTGATCTTGAAGAACAARTCACTGTGAATCACATGCTGACTGTTCTGAAGATTGCTCTGCTTTGCACAAGCATGTCTCCTTCAGAGAGGCCTTCGATGCGCGAAGTCGTGTTGATGCTTATCGAGTCGAATGAACGCGAAGGAAACTTAACGCTCACTCGGACTAACCATGATCTTCCTTCCAAAGATGCCACACATTAG 3345 0.4218 MVSKIKMSKGYSVIVLLLLFLSLILCTAEGLNAEGQILLDLKNGFHDKNNLLRNWNPADETPCEWLGVNCSYYEYNNSKSPVVMSLDLSSMGLSGILNGSSIGGLTHLTYLNLSHNKLSGKIPKEIGDCLNLEYLYLNNNQFQGPIPDELGNLSRLRSLNICNNKLNGVFXDEFGNLSSLVELVAYSNFLVGPLPSTIGKLKNLVTFRAGANNITGSLPKEISGCASLMYLGLAQNDISGELPSEIGMLQNLTELILWDNQLSGPIPKEIGNLTNLEILALYWNDLVGPIPPEIGNLKSLKFLYLYKNNLNGTIPREIGNLSSAREIDFSENSLVGYIPSELSKIRDLRLLFLFENHLIGVIPDELSSLRNLSRLDLSMNGLTGSIPSGFQYLTNMSQLQLFDNKLSGVIPQELGLHSPLWVVDFSDNNLTGTIPPHLCWNSHLMLLNLQSNRFYGNIPRGILKCKSLAQMLVVGNMLTGGFPSELCKLPNFIAIELNENKFSGPIPPVIANCSKLQRLHIANNYFTLELPKEIGNLSQLVTFNVSSNHFTGTIPSEIFRCQKLQRLDLSXNKFIGSLPNNIGTLEHLEILKLSGNELSGKIPEEIGNLSHLNWLQMDGNLFSXEIPAQLGRLSTLQIGMDLSYNNLSGRIPSQLGNLNMLEYIYLNNNHLDGEIPSSFDQLSSLLGCNFSYNNLSGPIPSDKIFQNMAASSFLGGNNDLCGRPLNECNSDLSSRGFPPVRHDDSRRAKIVMIAAATVGSVSLILILVILYVMRWPFNSTSSLRDTESPCLDSDIYFPPKDGFTFQDLVEATKRFHESYVIGRGACGTVYKAVMKSGKTIAVKKLASNREGNNIENSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLLYEYMERGSLGEVLHGSATNLEWPIRFMIALGAAEGLAYLHHDCKPKIIHRDIKSNNILLDENFEAHVGDFGLAKVIDMPQSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLEQGGDLVTWVRTHIRSHNNVLTQGILDNRIDLEEQXTVNHMLTVLKIALLCTSMSPSERPSMREVVLMLIESNEREGNLTLTRTNHDLPSKDATH* 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1548 1114 Gene3D Ribonuclease Inhibitor 419 732 IPR032675 -
Amo12g1548 1114 Gene3D Transferase(Phosphotransferase) domain 1 893 1107 - -
Amo12g1548 1114 Pfam Protein kinase domain 816 1085 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g1548 1114 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 13 1099 - -
Amo12g1548 1114 Pfam Leucine Rich Repeat 661 682 IPR001611 GO:0005515
Amo12g1548 1114 SMART serkin_6 815 1088 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g1548 1114 Gene3D Phosphorylase Kinase; domain 1 781 892 - -
Amo12g1548 1114 Gene3D Ribonuclease Inhibitor 33 155 IPR032675 -
Amo12g1548 1114 SUPERFAMILY Protein kinase-like (PK-like) 793 1088 IPR011009 -
Amo12g1548 1114 SUPERFAMILY RNI-like 280 704 - -
Amo12g1548 1114 ProSiteProfiles Protein kinase domain profile. 815 1089 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g1548 1114 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Amo12g1548 1114 Pfam Leucine rich repeat 83 142 IPR001611 GO:0005515
Amo12g1548 1114 Pfam Leucine rich repeat 563 621 IPR001611 GO:0005515
Amo12g1548 1114 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 13 1099 - -
Amo12g1548 1114 Gene3D Ribonuclease Inhibitor 241 341 IPR032675 -
Amo12g1548 1114 Gene3D Ribonuclease Inhibitor 156 240 IPR032675 -
Amo12g1548 1114 ProSitePatterns Serine/Threonine protein kinases active-site signature. 936 948 IPR008271 GO:0004672|GO:0006468
Amo12g1548 1114 SUPERFAMILY L domain-like 33 322 - -
Amo12g1548 1114 SMART LRR_typ_2 249 273 IPR003591 -
Amo12g1548 1114 SMART LRR_typ_2 369 392 IPR003591 -
Amo12g1548 1114 SMART LRR_typ_2 105 129 IPR003591 -
Amo12g1548 1114 SMART LRR_typ_2 393 417 IPR003591 -
Amo12g1548 1114 SMART LRR_typ_2 537 561 IPR003591 -
Amo12g1548 1114 SMART LRR_typ_2 153 176 IPR003591 -
Amo12g1548 1114 SMART LRR_typ_2 585 609 IPR003591 -
Amo12g1548 1114 SMART LRR_typ_2 297 321 IPR003591 -
Amo12g1548 1114 SMART LRR_typ_2 658 681 IPR003591 -
Amo12g1548 1114 Gene3D Ribonuclease Inhibitor 342 418 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1548 Amo-Chr12 67887392 67893291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1548 31 1090 Receptor kinase-like Gene Family AT4G26540 37.697 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo12g1548 Pkinase 2.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1548 - - gmx:100805792 1671.37