Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1538 GCCACCTCTGCCGGTGTTCCCTGCATCGGCGCTCCTTCCGTCTCTCCTGTAAACACCTATCCCTCCTTCGGCAGTGAGTCACTCTGCACCCGCCGCGTTGCCGTCTCCCTCTCTGAAGTCATCGCGCTGCCGTCTCCATCTCCCTCACTCGTCGCACCTCCGTCAGCTACGTTCAGCGTTCGCAGCACCGTGCTGCTGCCATGTGATGCTGAACTGCTACTGCTTTGCATGTTCTGTTATTCTAGTTTTTCTACATCAACTAGTAGTAGAGCAGCGGACTCCTACTGGGAGAAAAAGTCTAAGACTGCTGGTCTTAGGGCAACTACAAACCATTTGTGTGATTTGAATCCTGAGGATGCGCACGAAATTCTTAGGCAAGCTGCTGAAATTTTTGAAGGAATAGGAATAATTAATATTGCAGCTCAATGTTTTTCAGATTTGGGGGATCATGAAAAAGCTGGAAAGCATTTCAAACAAAGAGGAATGGTTCCCCCATTTCAACCTCTTTCCATGGCTTTCAGCAATATCAATTACTATGTGGATGTCCCTTTGGCCTGGAGTGTTGACAGCATTGGTTGGAGTAAGCGGGGCTGGAAAACCACGCTAATGGATGTCTTGGCTGGAAGAAAAACTGGAGGTGTTGTGAAGGTTCTTCTACAGCTAGATCCGTTTCTCAATGAACTCACCATCATGTTCGAGCGCAGCACCGAGACGGGCTCTGTTTGGGTTACACTTAAACGATCATCCTTGAAGCCTAAAGCTGTGAGGAATAAAATGGCCGTAGCTGGTGAAGCGATTGACTATAAATGCCTTATTCGTTTCACCAATGGAAAGAAGACAATTTCTACATCAGTACATTTCAGATACAAAGCTGGTTTGAGGATAGGTTCCAAGACTTACCAGATGACCCCTAATAATGAATTGATGATTCCCGAAGACCCTAAATGTAATAAGGAAGGTCCTGACAGAAGGATCTTCTTGCCAGAGGGTCTCTTGGACCGATCCGAGATCCCACCATACTTGAATGGAGAAGTGCCCGGAGACTATGGTTATGATCCTTTTGGTCTCAGCAAGATGCCAGAGGACTTTGCCAAGTATGTCTTAACACTTTTTCAAACTTGA 1122 0.4661 ATSAGVPCIGAPSVSPVNTYPSFGSESLCTRRVAVSLSEVIALPSPSPSLVAPPSATFSVRSTVLLPCDAELLLLCMFCYSSFSTSTSSRAADSYWEKKSKTAGLRATTNHLCDLNPEDAHEILRQAAEIFEGIGIINIAAQCFSDLGDHEKAGKHFKQRGMVPPFQPLSMAFSNINYYVDVPLAWSVDSIGWSKRGWKTTLMDVLAGRKTGGVVKVLLQLDPFLNELTIMFERSTETGSVWVTLKRSSLKPKAVRNKMAVAGEAIDYKCLIRFTNGKKTISTSVHFRYKAGLRIGSKTYQMTPNNELMIPEDPKCNKEGPDRRIFLPEGLLDRSEIPPYLNGEVPGDYGYDPFGLSKMPEDFAKYVLTLFQT* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1538 373 Gene3D Chlorophyll a/b binding protein domain 325 368 - -
Amo12g1538 373 Pfam Signal recognition particle 14kD protein 219 286 IPR003210 GO:0005786|GO:0006614|GO:0008312|GO:0030942
Amo12g1538 373 SUPERFAMILY Signal recognition particle alu RNA binding heterodimer, SRP9/14 217 287 IPR009018 GO:0006614|GO:0008312|GO:0048500
Amo12g1538 373 SUPERFAMILY Chlorophyll a-b binding protein 336 367 - -
Amo12g1538 373 PANTHER - 162 289 - -
Amo12g1538 373 Gene3D Signal recognition particle alu RNA binding heterodimer, srp9/1 217 313 IPR009018 GO:0006614|GO:0008312|GO:0048500
Amo12g1538 373 PANTHER SIGNAL RECOGNITION PARTICLE 14 KD PROTEIN 162 289 IPR003210 GO:0005786|GO:0006614|GO:0008312|GO:0030942
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1538 Amo-Chr12 67622953 67627252 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1538 320 366 Chloroplast and Mitochondria Gene Families AT4G10340 87.234 5.51e-22 92.8