Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1449 ATGGAGCCTTTGGAAATTGATCTTGTGGATATTCCTGATACTCCAGATAGATTAACTACCAGGCCTGGTGATCAGAAACATGTTCGGAATCCTGAGAAGAGGGAGAAGGKCTTCCCTGCTGCTGATGAAATGAAGAAACTCAGCAACTATATAATACTTTCCCCATCAAAGGCACCTTATCCTTCTTATAATGGCCCCTTCTTCAGAAAAACTCAAACTGAGAAAACTTTAGGACTTGGGACAGCACACTCTATTGGTGCTGAAAAGATGGAGAGAGGGAAAACTGTAAGCTCTAGATTTCCTGCTAARTCATWTCRCCATGGACCTAGGTCTGTTTTAGATTTTACTGAAGAGAATGAGAACTCCCAACAGCTGAAACCAGCTTTCTCACATCATGGATCAAGAGATAAGGCTGTTGAAGATAAGAAAGSAACAAGCGCTGGAAACACTTCATCACGAGTTGTTGCTGATTCTTCTACTGCCTTCAGAWATAAAATGCTACCAGGTCCTAATATATCTCAGGAGCGTGGCAAGGGAATTGCACTGCCTAATGATTCTCATCCTCCACTAAACACTGAAAAGCAACTGTCTTTGGCCCCTCAAATTTCCACCACACCAAGAGTTAGAGGGCAGAAGAGATTGGTACGACATGGGTGTATTTCACCATATAATATTGCAAATAGAGCAAATCAAACAACTATAAAGGATGATCACCAAACCAAGGAAGTTGAAGAAAGTCATGCTGTGGATTTAGTTTCTACCAATCCAATTTCTACGATTAATGTTGAAGATATAGTTGCTGAAGAGAGAGGCTGTAATAGAGTGAAGGGAAAGCAAGCACTTATTCATCCTTCATCATATGGTCATAACCCTGGAACTGTTGGCATGGCTAGCAGCCCTGCGACTGATTTTGAGGAGGGCCATTCAGCCAGTAATGCTGTAAGGAATTCACTTAAATACTCTGGGGGACAAGATGGTTGGAGAACTACACATACTCATAACAGCATTGATCAGCATCCTTATGATGTGAATGGGCATAATTTACGCAGAAGCCATGATGTTGGAAGATTTATTGCTAGACAAAATATGAACAGAATGGATAGAAGAGACACTCATAGCAGTCAAAGTGGCAAGGATGCACAAGGTTCTTCATCAGATAATGCAGCTCAAGCAACTTCACTGACAATTCGAGAGATAGATCAGTTGACTGTAACTCATCCTGCCACAGGCACACTGAGTAAAAGGCAAAAGAAACGTGGATCAACATCAGGAAATCCTGGGGAATCATCAAGCTCATCCCATAACCCTGTCTTGAATTCTGAAGTAGTCGACTTATCACCAGAACCCAGTTATCCCAACAGATTTACTGAAGGCTTAGATGACAATGACAATGACAAAGCTCGAGCAAGGCAAGTAGAAGCAGATGAGAGATTGGCACGTGAACTCCAAGAACAACTGTATCATGATGATATTTTTGAAGGGAGAGGGATTGATGAACATTTAGCCTTGGCACTGCAGCAAGAGGAGAATCTTACTCGTACTTCTTTTGATAATCACCAAGCATCAAATCCTATGTTTCCGAGGGCAAATAGTCAGCCTCGTTCACGGACACATCAAAATCCTTCTAATAGGAGGAGAGTTCCACCTCAAGTTCCTTCCTCTAATAGAATGTCACAGTTGAGGTCACAGTTGAGGAGTCACATAGCAAATCGCTCCCGAAGACCAGCCATATCATCCAGAGGACGACGCCCCCGGTTTCCTGTGGATATGGACTTAAACATGAGGCTTGATATATTGGAAGCATTAGAGGATGCAGTAGGGGATTTTGCAGATTTAGGGATGGGTAATGACATCTTTCTTGCTCAACATGATTTTAATGAACATGATTATGAAATGTTGTTGGCCCTTGATGAGCAAAACCACCGACATACTGGTGCATCCTCCAATCAGATCAATAGTTTGCCGGAGTCCACCATCCAGAATGACAACTTCGCAGAGGCCTGTGCAATATGCCTTGAGACCCCAGGCAAGGGTGAAATTATTCGCCATCTTCCCTGTTTGCACAAATTTCACAAAGATTGTATTGATCCTTGGCTCCATAGGAAAACATCATGCCCGGTGTGCAAGTCATCTATCACCTAA 2142 0.4248 MEPLEIDLVDIPDTPDRLTTRPGDQKHVRNPEKREKXFPAADEMKKLSNYIILSPSKAPYPSYNGPFFRKTQTEKTLGLGTAHSIGAEKMERGKTVSSRFPAKSXXHGPRSVLDFTEENENSQQLKPAFSHHGSRDKAVEDKKXTSAGNTSSRVVADSSTAFRXKMLPGPNISQERGKGIALPNDSHPPLNTEKQLSLAPQISTTPRVRGQKRLVRHGCISPYNIANRANQTTIKDDHQTKEVEESHAVDLVSTNPISTINVEDIVAEERGCNRVKGKQALIHPSSYGHNPGTVGMASSPATDFEEGHSASNAVRNSLKYSGGQDGWRTTHTHNSIDQHPYDVNGHNLRRSHDVGRFIARQNMNRMDRRDTHSSQSGKDAQGSSSDNAAQATSLTIREIDQLTVTHPATGTLSKRQKKRGSTSGNPGESSSSSHNPVLNSEVVDLSPEPSYPNRFTEGLDDNDNDKARARQVEADERLARELQEQLYHDDIFEGRGIDEHLALALQQEENLTRTSFDNHQASNPMFPRANSQPRSRTHQNPSNRRRVPPQVPSSNRMSQLRSQLRSHIANRSRRPAISSRGRRPRFPVDMDLNMRLDILEALEDAVGDFADLGMGNDIFLAQHDFNEHDYEMLLALDEQNHRHTGASSNQINSLPESTIQNDNFAEACAICLETPGKGEIIRHLPCLHKFHKDCIDPWLHRKTSCPVCKSSIT* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1449 713 MobiDBLite consensus disorder prediction 83 192 - -
Amo12g1449 713 MobiDBLite consensus disorder prediction 512 566 - -
Amo12g1449 713 MobiDBLite consensus disorder prediction 376 440 - -
Amo12g1449 713 MobiDBLite consensus disorder prediction 343 375 - -
Amo12g1449 713 Pfam Ring finger domain 667 709 IPR001841 -
Amo12g1449 713 CDD RING-H2_PA-TM-RING 668 709 - -
Amo12g1449 713 MobiDBLite consensus disorder prediction 458 472 - -
Amo12g1449 713 MobiDBLite consensus disorder prediction 144 158 - -
Amo12g1449 713 MobiDBLite consensus disorder prediction 283 472 - -
Amo12g1449 713 SUPERFAMILY RING/U-box 667 712 - -
Amo12g1449 713 MobiDBLite consensus disorder prediction 304 341 - -
Amo12g1449 713 MobiDBLite consensus disorder prediction 115 129 - -
Amo12g1449 713 SMART ring_2 668 708 IPR001841 -
Amo12g1449 713 ProSiteProfiles Zinc finger RING-type profile. 668 709 IPR001841 -
Amo12g1449 713 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 467 711 - -
Amo12g1449 713 PANTHER - 467 711 - -
Amo12g1449 713 Coils Coil 464 484 - -
Amo12g1449 713 MobiDBLite consensus disorder prediction 10 29 - -
Amo12g1449 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 634 713 IPR013083 -
Amo12g1449 713 MobiDBLite consensus disorder prediction 512 583 - -
Amo12g1449 713 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1449 Amo-Chr12 60665936 60675504 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1449 1 713 C3H Transcription Factor Family AT1G04790 32.761 4.57e-80 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1449 - - aprc:113872307 822.772