Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1440 ATGGCTCAGCCGTCATGCTCAGCGGCGCAACTGGCACAATACTTCGGCCCCAACGCCACCAACGCTGCAGCCGCTGCAAGTCTCATCTGCGATCAGTTCACCGCCGTGAGTATGCAGTACAAAGACACCAAGCACGCAGTGGACAGCACCTACCTCCTCTTCTCAGCCTATCTCGTCTTCTCCATGCAGCTCGGCTTCGCCATGCTCTGCGCCGGCTCCGTCCGCGCCAAGAACACCATGAACATCATGCTTACCAACGTCCTCGACGCCGCCGCCGGCGGCCTCTTCTACTACCTATTCGGTTTTGCCTTTGCTTTCGGCGTCCCCTCCAATGGCTTCATCGGCCGCCACTTCTTCGGCCTCAAGCAAGTTCCTTCAGAAGCTCAGGATTTTGACTACAGCAACTTCCTCTACCAGTGGGCCTTCGCCATCGCCGCCGCTGGCATCACCAGCGGCTCTATCGCGGAGCGGACGCAGTTCGTCGCTTACCTCATCTACTCATCCTTCCTCACTGGCTTCGTCTACCCCGTTGTGTCGCATTGGATCTGGTCCACCGATGGGTGGGCCAGTGCCTTCAACACAGGGAACCTCCTCTTCGGATCTGGAGTCATCGATTTTGCGGGCTCCGGAGTCGTTCACATGGTCGGTGGGATTGCCGGTTTATGGGGTGCCTTAATTGAGGGGCCCAGAATAGGCCGTTTCGATCACACCGGCCGAGCGGTGGCTTTACGTGGGCACAGTGCATCATTGGTGGTACTTGGTACTTTCATGCTCTGGTTTGGTTGGTATGGATTTAACCCAGGCTCTTTTAACAAGATTCTAGTTTACTACGACGAATCTGGCAATTATTATGGTCAATGGAGTGCTGTTGGTAGGACCGCAGTAACTACAACCTTAGCCGGTTGTACGGCCGCCCTAACAACACTTTTTGGGAAAAGGATATTGTCTGGTCACTGGAACGTGACTGATGTTTGTAACGGGTTGCTAGGCGGGTTCGCAGCGATCACGGCCGGATGCTCTGTCGTGGAGCCTTGGGCTGCAATTGTGTGCGGCTTTTTTGCCTCCTTGGTTTTGATTGGCTGCAATAAATTGGCTGAAAAAGTCAAATATGACGACCCGTTGGAGGCCGCTCAGCTTCATGGCGGCTGCGGCGCGTGGGGTGTGATTTTCACCGCTCTCTTTGCGAAGAAGGAGTATGTGAAACAGGTCTACGGGTCGGGTCGGGGGCACGGGCTGTTGATGGGTGGTGGCGGAAAACTGCTGGCGGCGCATGTGATTCAGATTCTGGTTATTACTGGTTGGGTGAGTGCTACAATGGGTCCACTTTTCTTTGTTTTGAATAAGATGAAGTTGCTTCGGATCTCACCGGAGGATGAACTCGCGGGTATGGATCTGACCCGACATGGTGGGTTTGCTTATGCTTACGAGGACGATGAATCGCACAAGCATGGGATTCAGTTGAAAAGAATTGAGCCAAACGCTTCCTCAACTCCTACCACAGAGTGA 1506 0.5425 MAQPSCSAAQLAQYFGPNATNAAAAASLICDQFTAVSMQYKDTKHAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGVPSNGFIGRHFFGLKQVPSEAQDFDYSNFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWIWSTDGWASAFNTGNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHTGRAVALRGHSASLVVLGTFMLWFGWYGFNPGSFNKILVYYDESGNYYGQWSAVGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFFASLVLIGCNKLAEKVKYDDPLEAAQLHGGCGAWGVIFTALFAKKEYVKQVYGSGRGHGLLMGGGGKLLAAHVIQILVITGWVSATMGPLFFVLNKMKLLRISPEDELAGMDLTRHGGFAYAYEDDESHKHGIQLKRIEPNASSTPTTE* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1440 501 Gene3D Ammonium transporter AmtB like domains 26 492 IPR029020 -
Amo12g1440 501 SUPERFAMILY Ammonium transporter 45 454 - -
Amo12g1440 501 ProSitePatterns Ammonium transporters signature. 205 230 IPR018047 GO:0008519|GO:0016020|GO:0072488
Amo12g1440 501 Pfam Ammonium Transporter Family 51 473 IPR024041 GO:0008519|GO:0016020|GO:0072488
Amo12g1440 501 PANTHER AMMONIUM TRANSPORTER 1 MEMBER 1 5 495 - -
Amo12g1440 501 TIGRFAM amt: ammonium transporter 48 473 IPR001905 GO:0008519|GO:0016020|GO:0072488
Amo12g1440 501 PANTHER AMMONIUM TRANSPORTER 5 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1440 Amo-Chr12 60151163 60153142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1440 5 499 Inorganic Solute Cotransporters AT4G13510 80.396 0.0 808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1440 K03320 - gmx:100818774 835.484