Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1435 ATGCAAGCCTTTGACTCCAATATGAGCATCAGTGATCATTTGCAACCCCAACGAACTAATAATATAAAACCAAACTATGTTTCAAGCCACCCCAACAATATTCAAATCCCTCAAACTCAAGCCTCTTTCTCTATGCCTCCAACATCCTCAAACTTAAGCAACCGCAAGCCCTTCTTGAAGAAAATCTCAATCCCTTCAACAAGACCAGCCCTCACAATGACCTTCACACAACAAAATGAAAGAACAACCGCTAATTGCAGCAACCAAAGTTTCTCGGAAAATTGTTACCCGAACGAGGATAAGCATTATAGAGGCGTTAGGAGACGACCATGGGGGAAGTTCGCCGCAGAGATTCGCGACCCAAATCGGAAAGGATCCAGGGTGTGGCTCGGAACATTTGACACAGCCATAGAAGCTGCAAGAGCATACGATAGAGCTGCTTTCAAGATGAGAGGAAGCAAAGCTATACTGAACTTCCCTCTTGAAGTTGGAGAATACTCTGAAGAATGTTCAGTTTCTTGCTCAATAATGAAGGTTGGTGAGAAGAGGAGAAGAGAAAATGATGAAGAGGGTAGTGAAAATGTTGTGGAGAGTAACAATAAGAAGCAAGTGAAGAAAGAGGAGTGCTTTACGGCATGTCCTTTGACACCATCGTGTTGGAAAGGGTTTTGGGACACCGAAGTTATGGGAACAATCTTTAGCGTTCCTCCTTTGTCACCTTTATCTCCACTCATGGTTGTTTGA 744 0.4341 MQAFDSNMSISDHLQPQRTNNIKPNYVSSHPNNIQIPQTQASFSMPPTSSNLSNRKPFLKKISIPSTRPALTMTFTQQNERTTANCSNQSFSENCYPNEDKHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAIEAARAYDRAAFKMRGSKAILNFPLEVGEYSEECSVSCSIMKVGEKRRRENDEEGSENVVESNNKKQVKKEECFTACPLTPSCWKGFWDTEVMGTIFSVPPLSPLSPLMVV* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1435 247 Gene3D AP2/ERF domain 101 162 IPR036955 GO:0003700|GO:0006355
Amo12g1435 247 ProSiteProfiles AP2/ERF domain profile. 102 160 IPR001471 GO:0003700|GO:0006355
Amo12g1435 247 PRINTS Ethylene responsive element binding protein signature 103 114 IPR001471 GO:0003700|GO:0006355
Amo12g1435 247 PRINTS Ethylene responsive element binding protein signature 126 142 IPR001471 GO:0003700|GO:0006355
Amo12g1435 247 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 23 236 - -
Amo12g1435 247 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 23 236 - -
Amo12g1435 247 SUPERFAMILY DNA-binding domain 102 162 IPR016177 GO:0003677
Amo12g1435 247 MobiDBLite consensus disorder prediction 1 33 - -
Amo12g1435 247 CDD AP2 101 160 IPR001471 GO:0003700|GO:0006355
Amo12g1435 247 SMART rav1_2 102 166 IPR001471 GO:0003700|GO:0006355
Amo12g1435 247 Pfam AP2 domain 102 152 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1435 Amo-Chr12 59898044 59899418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1435 48 240 AP2-EREBP Transcription Factor Family AT5G51190 51.759 1.92e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo12g1435 AP2 1.6e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1435 K09286 - gmx:100795866 237.269