Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo12g1428 | ATGATCTCGGCACCCCTAAAAAAGCGTGGCAAAAACTCTGTTGCTCATCCCCAACTCAGACAGAGCTCATCATCGGCGCTTTCACTCTCTCCTCTACCGGCACTCCCTCCGTCGTCTCTCCTAACCCGTCTCTGCTGGCGCTCGCATTCCCTACGCTCACTACTCACGGTGTCAGTCAGCCAACGGAGGTTGCCTTTCCTTCCTCCGCGCTGCTATTCTCTACCCTCCTCCCTCGTCATCTTGCTCAATCTTCCACCACCTTCGAAGTCCTCACTGCATGCATATGGAATTGTCATACAGCTACATTGCAATGGCAAAACCCTAACACCAAGAGCACTCAACCGCAACAAAGGCAATGACTGGCCTTTTGCTTCCGGCGCTCACGGAGCCTGCTATCTCCACGCCATTACTTCTAAGGTCGTCGAGAGAAAGGATCACCTCGCTAAGCTTGAATCCCTTGAATGCGGAAAACCACTCGATAAAGCTTCCTGGGACATGGATGATGTTGCTGGTTGCTTCGAGTTTTACGCTGACCTTGCCGAGAAACTAGACGCTAAGCAGAAGGCACCCGTTTCTCTTCCCATGGAAACTTTCAAGAGAGAAATACATGATTGTTTGATCTGTGTGATTATTAGGAAGCTGATTCGAGAAACTTATTTTGAGACTTATGGAGAAGATCTCCTCAAGGCCTTGGACAAGGAGCTCAGCAATGACTTTGAGGGAAAAGGGAATGGAGGAAGTAACAAGCTGGTACTTCTTTGGACACTTGATCCTGCTGAGCGAGATGCATTTTTGGCGAACAAAGCAACCAAAAGATGGACTTCAAGCAATCATGTTTTGATGGAAATAGCTTGTACCAGGTCCTCTGACCAATTGCTTTTCGCAAGGAAGGCTTATCATGCTCGTTATAAGAAGTCTCTCGAGGAGGATGTTGCTCATCACACAACCGGGGAGTTCCGTAAGTTTTATGCTGCTTGCTTATACAGTGGACGTGATGATCCGATACCCAGCCCATTTAACCCGTTGACAGATGGCAACACCCAGCCCATAATTCATGTACTCACCAGGTATGATATCTTGACCTTGCTAGCTTGGGGTGTTCTTTACATGTTCTTCTTCTACTTGGTACTGAGATTTTACTCCAAGAATGAGAGAAAATGA | 1161 | 0.4763 | MISAPLKKRGKNSVAHPQLRQSSSSALSLSPLPALPPSSLLTRLCWRSHSLRSLLTVSVSQRRLPFLPPRCYSLPSSLVILLNLPPPSKSSLHAYGIVIQLHCNGKTLTPRALNRNKGNDWPFASGAHGACYLHAITSKVVERKDHLAKLESLECGKPLDKASWDMDDVAGCFEFYADLAEKLDAKQKAPVSLPMETFKREIHDCLICVIIRKLIRETYFETYGEDLLKALDKELSNDFEGKGNGGSNKLVLLWTLDPAERDAFLANKATKRWTSSNHVLMEIACTRSSDQLLFARKAYHARYKKSLEEDVAHHTTGEFRKFYAACLYSGRDDPIPSPFNPLTDGNTQPIIHVLTRYDILTLLAWGVLYMFFFYLVLRFYSKNERK* | 387 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo12g1428 | 386 | PANTHER | ANNEXIN D2 | 212 | 324 | - | - | |
| Amo12g1428 | 386 | SMART | annex3 | 274 | 326 | IPR018502 | GO:0005509|GO:0005544 | |
| Amo12g1428 | 386 | SMART | annex3 | 203 | 253 | IPR018502 | GO:0005509|GO:0005544 | |
| Amo12g1428 | 386 | Pfam | Annexin | 262 | 322 | IPR018502 | GO:0005509|GO:0005544 | |
| Amo12g1428 | 386 | ProSiteProfiles | Annexin repeat profile. | 257 | 328 | IPR018502 | GO:0005509|GO:0005544 | |
| Amo12g1428 | 386 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
| Amo12g1428 | 386 | Gene3D | Annexin | 257 | 327 | IPR037104 | GO:0005509|GO:0005544 | |
| Amo12g1428 | 386 | PANTHER | ANNEXIN | 212 | 324 | - | - | |
| Amo12g1428 | 386 | SUPERFAMILY | Annexin | 212 | 337 | IPR037104 | GO:0005509|GO:0005544 | |
| Amo12g1428 | 386 | MobiDBLite | consensus disorder prediction | 15 | 30 | - | - | |
| Amo12g1428 | 386 | SUPERFAMILY | ALDH-like | 119 | 192 | IPR016161 | GO:0016491 | |
| Amo12g1428 | 386 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 119 | 203 | IPR016162 | GO:0016491 | |
| Amo12g1428 | 386 | Pfam | Aldehyde dehydrogenase family | 121 | 191 | IPR015590 | GO:0016491 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo12g1428 | Amo-Chr12 | 58350661 | 58353167 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo12g1428 | 111 | 199 | Aldehyde Dehydrogenase Gene Family | AT1G74920 | 77.528 | 4.57e-38 | 141 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo12g1428 | K17098 | - | pvy:116146942 | 182.57 |