Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1377 ACAAAATTATCCATTTTTGAAACCGGAATTAAAGTAGTAGATCTTTTAGCTCCTTATCGCCGTGGAGGAAAGATTGGACTCTTTGGCGGAGCTGGAGTGGGTAAAACAGTACTTATTATGGAATTGATCAATAACATTGCCAAAGCTCATGGCGGTGTATCCGTATTTGGCGGAGTGGGGGAGCGTACTCGTGAGGGAAATGATCTTTACATGGAAATGAAAGAATCCGGAGTAATTAATGAAAAAACTATTGGAGAATCAAAAGTTGCTCTAGTGTACGGTCAAATGAATGAACCGCCTGGAGCCCGTATGAGAGTTGGTTTAACTGCCCTAACTATGGCGGAATATTTCAGAGATGTTAATGAACAAGACGTGCTTCTATTTATCGACAATATCTTCCGATTCGTCCAAGCGGGATCCGAAGTGTCAGCCTTATTGGGTCGAATGCCTTCCGCTGTAGGTTATCAACCGACCCTTAGTACCGAAATGGGTTCTTTACAAGAAAGAATTACTTCTACCAAAGAAGGGTCTATAACTTCTATTCAAGCAGTTTATGTACCCGCAGACGATTTGACCGACCCTGCCCCTGCTACGACATTTGCACATTTGGATGCTACGACCGTACTATCAAGAGGATTGGCTGCCAAAGGTATCTATCCAGCTGTAGATCCTTTAGATTCAACGTCAACTATGCTCCAACCTCGGATTGTTGGTGAAGAACATTATGAAACTGCGCAAAGAGTTAAACAAACTTTACAGCATTACAAAGAACTTCAGGACATTATAGCTATCCTTGGGTTGGACGAATTATCCGAAGAGGATCGCTTAACTGTAGCAAGAGCACGGAAAATTGAGCGTTTCTTATCACAGCCTTTTTTCGTAGCAGAAGTATTTACCGGTTCGCCAGGAAAATATGTAGGTCTAGCAGAAACAATTAGAGGGTTTAAATTGATTCTTTCTGGAGAATTAGACGGTCTTCCCGAGCAAGCCTTTTATTTGGTGGAAGTGAAGGAAATTATTTTGTCCACTAATAGTGGACAAATTGGAGTATTACCAAATCATGCACCTATTGCTACAGTTGTAGATATAGGTATCTTGAGAATACGCCTTAATGACCAATTGGTAACAATGGCTCTGATGGGTGGTTTTGCTAGAATAGGCAATAATAAGATCACCATTTTAGTAAATGATGCCGAGAAGAGTAGTGACATTGATCCAGAAGAAGCTAAACAAACTCTTGAAATAGCAGAAGCTAACTTGAGTAAAGCTGAAGGCAAGAGACAACTAATCGAGGCAAATCTATCTCTCCGACGAGCTAGGACACGAGTAGAGGCTATCAATATGCTTTCGCAATAA 1356 0.4115 TKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKTIGESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQHYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVEVKEIILSTNSGQIGVLPNHAPIATVVDIGILRIRLNDQLVTMALMGGFARIGNNKITILVNDAEKSSDIDPEEAKQTLEIAEANLSKAEGKRQLIEANLSLRRARTRVEAINMLSQ* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1377 451 Gene3D - 1 318 - -
Amo12g1377 451 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 9 229 IPR000194 GO:0005524
Amo12g1377 451 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 327 399 IPR036771 -
Amo12g1377 451 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 327 398 IPR020546 GO:0015986
Amo12g1377 451 PANTHER F0F1-TYPE ATP SYNTHASE, BETA SUBUNIT 1 352 - -
Amo12g1377 451 CDD ATP-synt_F1_beta_C 236 339 - -
Amo12g1377 451 CDD F1-ATPase_beta 1 234 - -
Amo12g1377 451 CDD F1-ATPase_delta 326 440 IPR001469 GO:0015986|GO:0045261|GO:0046933
Amo12g1377 451 Hamap ATP synthase epsilon chain [atpC]. 318 445 IPR001469 GO:0015986|GO:0045261|GO:0046933
Amo12g1377 451 Coils Coil 413 433 - -
Amo12g1377 451 PANTHER ATP SYNTHASE 1 352 - -
Amo12g1377 451 TIGRFAM atpD: ATP synthase F1, beta subunit 2 336 IPR005722 GO:0015986|GO:0045261|GO:0046933
Amo12g1377 451 Gene3D - 406 451 - -
Amo12g1377 451 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 232 334 - -
Amo12g1377 451 TIGRFAM ATP_synt_epsi: ATP synthase F1, epsilon subunit 327 447 IPR001469 GO:0015986|GO:0045261|GO:0046933
Amo12g1377 451 ProSitePatterns ATP synthase alpha and beta subunits signature. 220 229 IPR020003 GO:0005524
Amo12g1377 451 SMART AAA_5 21 213 IPR003593 -
Amo12g1377 451 Pfam ATP synthase, Delta/Epsilon chain, long alpha-helix domain 403 446 IPR020547 -
Amo12g1377 451 Gene3D - 326 404 IPR036771 -
Amo12g1377 451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 234 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1377 Amo-Chr12 54255041 54256509 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1377 8 293 Primary Pumps ATPases(2) AT1G78900 29.508 6.64e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1377 K02112 - csin:114305725 825.083