Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1362 CGACGTCATGCAAACACCCTCCCTCCCCCCAACCAAAATCCCTCATCCCCCCAACTTTCCCCATTCCCTCGTAAGTTCTCCCCAAATTTCCCCAATCCTTCAGCTCAGAACTGGCCAAGCCTTCTTTTCTGCCCAGCCACGCACCCTCCTCCCCTCTCTCGTCGTGCAAAACCTAGTCGCCGGTCACCAGCTTCGAAGCCCACTGTCCGTTGTCATCTTGCTCCAACCCGTGAAGCTGGGCATCAGCTCCGCTTTGCCCACCGTCCGTCATTGGCGTCCGTTGGGTCATCCTGGAGCTTGTCTCGAAGCCTCAAACCCGTCGCCGTTCGTGTCATCATTGTGGAAGCCTCAAAGCTCTCCCTAAATCTGCGAATCACCAGCTTCACGGGCCTGGTGTACAAAGCCCTCAAAGCTCTTCGTAATAAAACTAAGGAGCTTGCTATCTTCTGCGATGTAGAAGTTGGTCTTGTTATATTCTCCAACACTGCAAAACTTTATGAATATATTATTTTTTTGGACTGGAAGACATGA 531 0.5179 RRHANTLPPPNQNPSSPQLSPFPRKFSPNFPNPSAQNWPSLLFCPATHPPPLSRRAKPSRRSPASKPTVRCHLAPTREAGHQLRFAHRPSLASVGSSWSLSRSLKPVAVRVIIVEASKLSLNLRITSFTGLVYKALKALRNKTKELAIFCDVEVGLVIFSNTAKLYEYIIFLDWKT* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1362 176 MobiDBLite consensus disorder prediction 18 34 - -
Amo12g1362 176 PRINTS MADS domain signature 134 149 IPR002100 GO:0003677|GO:0046983
Amo12g1362 176 PRINTS MADS domain signature 149 170 IPR002100 GO:0003677|GO:0046983
Amo12g1362 176 MobiDBLite consensus disorder prediction 49 68 - -
Amo12g1362 176 SUPERFAMILY SRF-like 136 169 IPR036879 GO:0003677|GO:0046983
Amo12g1362 176 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 137 168 IPR002100 GO:0003677|GO:0046983
Amo12g1362 176 Gene3D - 134 170 IPR036879 GO:0003677|GO:0046983
Amo12g1362 176 ProSiteProfiles MADS-box domain profile. 134 168 IPR002100 GO:0003677|GO:0046983
Amo12g1362 176 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1362 Amo-Chr12 52334102 52337765 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1362 134 168 MADS-box Gene Family AT4G37940 62.857 8.43e-09 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo12g1362 SRF-TF 7.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1362 K09264 - qsu:112018910 51.2174