Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1303 ATGGATTCTTCTTCTTCTGGTTCCACATTCTACGACCTACCTCCCCTCAAGAGACTCAGATTACAACTCCAACAACAACAACAACACACTCCCTTACCTGCCAAGAAGCGCAAAGATTCCCGAAACGCTGCGTTTTACGAAAACCTGAACCCAAATCCAATCCCTCCTTCCGCCACTGCTTATTGTTTACCCGCCAAGAAAAGAGTATGCGCTTTTCAACCCTTCCTCCCACAAAACGACGCCGTTTCACCCTTCCAAATCGACCTCAACCTCGAATACCAAGAAACCGACAAAAAGCTCCAATCTCTCCCCTCATCTCCCCAAAAGCGTCAAGAGCAATATCTTGACGGCAACGGTAACGTCAACGATTGCGATGATGTTGACGTTGACGTTGACGACGGGATTTTATGCTGTGTGTGCCAGAGCACAGACGGAGACCCTACGGATCCAATCGTATTTTGCGACGGTTGCGACCTAATGGTCCACGCTTCCTGCTACGGAAACCCGCTCTCAAAGTCAATCCCAGACGGAGACTGGTTCTGCGAACGGTGTCGTTTCAAAGACGAAGAAGCTGCTTCAGATGCGTCCTCTGTTTCTTGCTGCTGCTGCCTCTGTCCGGTGACCGAAGGCGCGATGAAGAAGACAACGGATAACCGTTGGGCTCACATCGTTTGCGCGCTACTGGTGCCGGAGGTGTTCTTCTTGGATCCTGAAGGGAGAGAGGGAATCGATTGTTCTATGGTTCCGAAGAAGAGGTGGTTGGAGAGGTGCTATGTTTGTGATTCTTGTGATGGTTGTGCTGTTGTGTGCTCTGAGCCAAAGTGCGGTTTGGCGTTTCATGTTACGTGTGGGATTAAAGAGGAGCTTTGTATTGAGTATAAGCAAGGCAAGAAGGGTGCTACCATTGTTGCTGGCTTCTGCAAAACCCACACCCAAATTTGGGACAAGCAACAGCAATCAGGGAAATACAAAATTGTTGCGGTTGAAGATGAAGTATAG 999 0.4915 MDSSSSGSTFYDLPPLKRLRLQLQQQQQHTPLPAKKRKDSRNAAFYENLNPNPIPPSATAYCLPAKKRVCAFQPFLPQNDAVSPFQIDLNLEYQETDKKLQSLPSSPQKRQEQYLDGNGNVNDCDDVDVDVDDGILCCVCQSTDGDPTDPIVFCDGCDLMVHASCYGNPLSKSIPDGDWFCERCRFKDEEAASDASSVSCCCCLCPVTEGAMKKTTDNRWAHIVCALLVPEVFFLDPEGREGIDCSMVPKKRWLERCYVCDSCDGCAVVCSEPKCGLAFHVTCGIKEELCIEYKQGKKGATIVAGFCKTHTQIWDKQQQSGKYKIVAVEDEV* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1303 332 CDD PHD_BRPF_JADE_like 136 184 - -
Amo12g1303 332 ProSiteProfiles Zinc finger PHD-type profile. 134 187 IPR019787 -
Amo12g1303 332 ProSitePatterns Zinc finger PHD-type signature. 137 184 IPR019786 -
Amo12g1303 332 Pfam PHD-zinc-finger like domain 202 310 - -
Amo12g1303 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 313 IPR013083 -
Amo12g1303 332 SUPERFAMILY FYVE/PHD zinc finger 131 187 IPR011011 -
Amo12g1303 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 192 IPR013083 -
Amo12g1303 332 ProSiteProfiles Extended PHD (ePHD) domain profile. 199 311 IPR034732 -
Amo12g1303 332 CDD ePHD 210 310 - -
Amo12g1303 332 Pfam PHD-finger 137 186 IPR019787 -
Amo12g1303 332 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 101 328 - -
Amo12g1303 332 SMART PHD_3 136 185 IPR001965 -
Amo12g1303 332 SMART PHD_3 256 311 IPR001965 -
Amo12g1303 332 PANTHER PHD FINGER PROTEINS 101 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1303 Amo-Chr12 47183240 47184394 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1303 12 331 C2H2 Transcription Factor Family AT3G14740 51.039 3.87e-106 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo12g1303 zf-HC5HC2H_2 8.2e-25 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1303 K11380 - gmx:100786929 375.555