Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1287 ATGTTAGGAGAAGAAGGAAAAATAAACAAGCCCTCTGGTAGCGGCACTCTTGCTCGGAGAACCTATTCCCGTTCGGTTTCATGGACAGATAGGTCTCCGAGCAGCCGCCACAAGGCACCACCACAACCACCAAACACAAAGCCAAGGCCATTTTTGCCACCTCTTCAGCCTCTTTCCATAAGAAAGCCCAGTGTCGAGGAATGGCCAAGCGCAGGATCCGACGATCTTGGCGTTTGGCCAGTTCCCCAGACACCAAGAGGGTCTATAAGACAGTTGGACTCCAGTCAACCCACCAAAGATTTTCAGTTCAAGAGAGACAAACTGGCCTTCTATGACAAAGAATGTTCTAGAATCGCGGAGCATATATACTTAGGAAGCGACACGGTTGCCAAGAACCATGAGCTCCTTAGGCAGAATGGAATCACTCATGTGCTGAACTGCGTTGGTTTCGTTTGCGCGGAGTATTTCAAAAGCGACTTTGTTTACAAAACACTCTGGTTACAGGACAGTCCTTCGGAGGATATAACAAGTATCCTCTATGATGTGTTCGACTATTTTGAAGATGTTCGAGAGCAGGGCGGCCGCGTCCTCGTCCATTGCTGTCAAGGCGTTTCGCGGTCGTCCTCTCTCGTCATTGCCTACCTCATGTGGAGGGAGGGACAAAGCTTTGAAGATGCTTTCCAGTATGTCAAGAATGCAAGGGGAGTGACAAATCCAAACATGGGTTTTGCATGTCAGCTTCTTCAGTGTCAAAAAAGGGTCCACGCTCTGCCTGCTAGCCCCAATTCTATTCAAAGGATGTACCGAATGGCGCCTCATTCGCCATACGATCCTCTTCATTTGGTACCAAAGACGGTTAATCAGCCGGGCGCGAAAGCGCTCGATTCTCGTGGCTCTTTCGTTGTCCATGTTCCCTCTACAATCTATGTTTGGATTGGCAAAAACTGCAGCCCGGTGATGTCCTCCAACGCACGAGGCGCGGCGCTTCAGGTAGTCCGGTATGAGAGGGCTAAGGGACCTATTTTGACGATCCATGAAGGTGAGGAAACACCTCAGTTTTGGATTGCTCTGTCTTCGGGTGATTCCGAGAAAGAAGGGGTGGAAATTGGCAAAGCGGCCGATATTGGTGCAAGAAAAGTTGGGGCGTATGATTTGGATTTTGAGATCTTTTACAAGGCAGTTGCCGACTGTGCAGGGTCGGAGACTTGTGTGCCGGCGAAGGAGCACGGATGGGGAATACTAAGGCAGAAGCTTGCTACAGGAGTCATGAAAGAGTTGCTTAGTTCTCCCAAATGTGTGAATATGGAAGACGGTGAAGAAGAGAAGCGAAACTCTGAGATTGAGCCTTTGTCACCGTCATCTAATCATTCCTTTGAATGTTATTTGAATAATAATAACAATTCAGACGCAATAGTAGTGGAGGATACTCCTAAAGCCGCGGACTCTGGTGTTGCTTCGAATCCTTTTCCGTGGAACAAATCGCCAACGCTTTCGCCCTCAAGCTCCGATTATGCAAGCTCTTTCACATTTTCACCTTCCTCAGGGAATTGGTCTGATTTATCATTTGTGTCATCTAGGCAGCCATCACCTTCTGGCATGGAATCAACCGAAGACGCGCCTTTTGCCGAGAGCTCCTCGTTACTTCACAAAGAAGTCTCCTCAACGCCGGAAACATTCTTGGCTAACGATGGTTTGGGAGGGGCGAGCTCCTGGTTCCAGATGGAAGGATCCTCCCTCTCAATAGCAGAGCGTCGGGGGAGTAATCCGCCGCCTCGGGTGCTGCTATCGTCCATTAATGAATCATCTCAGCTCCACAAGAACCTGGAGGATTGCATGTATTAA 1842 0.4902 MLGEEGKINKPSGSGTLARRTYSRSVSWTDRSPSSRHKAPPQPPNTKPRPFLPPLQPLSIRKPSVEEWPSAGSDDLGVWPVPQTPRGSIRQLDSSQPTKDFQFKRDKLAFYDKECSRIAEHIYLGSDTVAKNHELLRQNGITHVLNCVGFVCAEYFKSDFVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVLVHCCQGVSRSSSLVIAYLMWREGQSFEDAFQYVKNARGVTNPNMGFACQLLQCQKRVHALPASPNSIQRMYRMAPHSPYDPLHLVPKTVNQPGAKALDSRGSFVVHVPSTIYVWIGKNCSPVMSSNARGAALQVVRYERAKGPILTIHEGEETPQFWIALSSGDSEKEGVEIGKAADIGARKVGAYDLDFEIFYKAVADCAGSETCVPAKEHGWGILRQKLATGVMKELLSSPKCVNMEDGEEEKRNSEIEPLSPSSNHSFECYLNNNNNSDAIVVEDTPKAADSGVASNPFPWNKSPTLSPSSSDYASSFTFSPSSGNWSDLSFVSSRQPSPSGMESTEDAPFAESSSLLHKEVSSTPETFLANDGLGGASSWFQMEGSSLSIAERRGSNPPPRVLLSSINESSQLHKNLEDCMY* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1287 613 MobiDBLite consensus disorder prediction 14 36 - -
Amo12g1287 613 ProSitePatterns Tyrosine specific protein phosphatases active site. 198 208 IPR016130 GO:0016311|GO:0016791
Amo12g1287 613 Pfam Dual specificity phosphatase, catalytic domain 122 252 IPR000340 GO:0008138|GO:0016311
Amo12g1287 613 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 3 555 - -
Amo12g1287 613 MobiDBLite consensus disorder prediction 432 454 - -
Amo12g1287 613 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 105 255 IPR029021 -
Amo12g1287 613 SMART VILL_6 266 360 IPR007122 GO:0051015
Amo12g1287 613 CDD DSP 115 249 - -
Amo12g1287 613 SUPERFAMILY Actin depolymerizing proteins 260 369 - -
Amo12g1287 613 MobiDBLite consensus disorder prediction 487 505 - -
Amo12g1287 613 Gene3D Protein tyrosine phosphatase superfamily 89 256 IPR029021 -
Amo12g1287 613 ProSiteProfiles Dual specificity protein phosphatase domain profile. 114 256 IPR020422 GO:0006470|GO:0008138
Amo12g1287 613 PANTHER MKPA PROTEIN 3 555 - -
Amo12g1287 613 MobiDBLite consensus disorder prediction 37 57 - -
Amo12g1287 613 MobiDBLite consensus disorder prediction 1 96 - -
Amo12g1287 613 MobiDBLite consensus disorder prediction 521 548 - -
Amo12g1287 613 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 173 234 IPR000387 GO:0016311|GO:0016791
Amo12g1287 613 MobiDBLite consensus disorder prediction 482 505 - -
Amo12g1287 613 Gene3D Severin 265 364 IPR029006 -
Amo12g1287 613 SMART dsp_5 114 253 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1287 Amo-Chr12 44970708 44974402 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1287 33 150 Protein tyrosine phosphatase (PTP) family AT3G55270 50.000 4.12e-31 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1287 - - lja:Lj6g3v0574850.1 799.66