Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1255 ATGCATAGCATTTTATTTTTTCTAGCGATGTTGTTCACATTGCTTCTATGTAACACACTGCAGGAGGAGATTTCGAGCCCAATCAGCGCCCGAATCTTCGAACTCTGCGACGCCGAGTTGTTCCCGGAGGCGGGTCTTCAGAGCTCTGACGTTACCTCAACCTCAAACTGTTGCTTTGAAGAGGCACAATACAAGACCAATACAGTCACCACACCAACTAGTACAGCACAAGATATAACTGCCTCGGCAGCGGCCGTTGCGGCCAATAACAATATTAACAAACCACCGGACAGCTGTAACAACCTTTCGGTTATCTTTGACTCCCAAGAAGAGCTTGACAATGACATCTCTGCTTCCATAGACTTCTCTTCTTCTCCAGCCGCAGCTTTTCCGGTTCCATCTCTTCTCCCAAATATCACAACTCAGCCGGAACAATTCGACTTCTCTTCGCCTTCGGTTCTCAAGGGTCTCCCTCATCAGTATCCAACTGACACTGCTACTACTGTTGTTGTTCCACCACTTATGGGGAATCCATTAGTACCTTCTGTTTTCGAAGATGAATGCATGTCTTCAATGGCTTCTTATGTTCCTATTAACTCTTCTTCCGCACCTTCTTGCTCTTATCTCAGCCCTGCTGGCTTAGGAGTGTTCATGCCTCCTCTTACTACCGCCTTATCTGCTGATTCTGCCTTGTTTGGTGGCAACATTCTACTCGGTTCGGAACTTCAAGCTCAAGAAATAGATTACCAAGGAGAAAATGGTGGAATATTTTGTACAGATTCAATTCAGAGGGTGTTTAATCCACCAGATCTTCAGACACTTAGTAGTGAGAGTCAGCAACTTGTACCTGGTTCTGGAGGCTCGGCCACTTTGGCACCAGAGATCTCAAACTTGGAGGACTCTACCTTAAAAGTTGGAAAACTTTCTGTTGAGCAAAGGAAGGAAAAGATTCATAGATACATGAAGAAGAGAAATGAAAGAAATTTTAGCAAGAAAATCAAGTATGCCTGCCGCAAAACTCTGGCTGATAGCCGACCCCGAGTTCGAGGAAGGTTTGCAAAGAATGATGACTTCGGAGAGAACCATAGACCAGCTTGTAGCAATCATGAAGAAGATGATGAAGAAGAAATAGTTGTGAAGGAAGATGATGATTTGGTCGATTCCTCAGATATCTTTGCACATATAAGTGGTGTGAACTCCTTCAAGTGCAACTATTCCTCCATCCAATCCTGGATTTAA 1239 0.4431 MHSILFFLAMLFTLLLCNTLQEEISSPISARIFELCDAELFPEAGLQSSDVTSTSNCCFEEAQYKTNTVTTPTSTAQDITASAAAVAANNNINKPPDSCNNLSVIFDSQEELDNDISASIDFSSSPAAAFPVPSLLPNITTQPEQFDFSSPSVLKGLPHQYPTDTATTVVVPPLMGNPLVPSVFEDECMSSMASYVPINSSSAPSCSYLSPAGLGVFMPPLTTALSADSALFGGNILLGSELQAQEIDYQGENGGIFCTDSIQRVFNPPDLQTLSSESQQLVPGSGGSATLAPEISNLEDSTLKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGENHRPACSNHEEDDEEEIVVKEDDDLVDSSDIFAHISGVNSFKCNYSSIQSWI* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1255 412 ProSiteProfiles CCT domain profile. 313 355 IPR010402 GO:0005515
Amo12g1255 412 MobiDBLite consensus disorder prediction 352 374 - -
Amo12g1255 412 Pfam CCT motif 313 355 IPR010402 GO:0005515
Amo12g1255 412 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 21 412 - -
Amo12g1255 412 MobiDBLite consensus disorder prediction 352 370 - -
Amo12g1255 412 PANTHER CCT MOTIF FAMILY PROTEIN 21 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1255 Amo-Chr12 43319111 43322764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1255 292 362 C2C2-CO-like Transcription Factor Family AT5G24930 39.437 1.85e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo12g1255 CCT 5.4e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1255 - - lja:Lj6g3v0082150.1 464.151