Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1252 ATGAACTGCTCCATTTCCGGCGAGGTGCCGGAAGACCCAGTGGTGTCTAAGAAATCCGGTCTTCTTTTTGAGAAGCGGTTAATTGAGACGCACATAGCGGATTATGGAAAATGTCCAATAACTGGAGAACCCCTTACGTTGGATGATCTTGTACCAATCAAAACAGGCAAGATAGTGAAGCCCAGACCAGTGCAGGCAGCTAGCATCCCTGGCATGCTTGGAATGTTCCAAAATGAATGGGATGGGTTGATGCTATCTAATTTTGCATTGGAGCAACAATTGCACACAGCCAGGCAAGAGCTAAGTCATGCTTTATATCAGCATGATGCTGCATGTCGAGTGATTGCAAGACTTAAAAAGGAACGAGATGAAGCTAGGTCATTGCTTGCAACAGCAGAAAGGCCATTCCCAGTGTCAGCGAATGCTATACCGGCAAATGTCTCTGGCTTGAGCAATGGGAAAAGAGCTGCTGAAGATGATGAGATGGCACATGGTGGAAAGAAAATGCATCCTGGAATAACTTCTGCAATAATTTCTGAGCTAACTGACTGCAATGCTGCTCTTTCCCAGCAGAGGAAAAAGCGACAGATTTCTACAACATTGGCTCCTGTTGAATCTATAGAGGCTTATACCCAGATATCTAGCCACCCCTTCCACAAAACAAACAAACCGGGCATTACATCTCTTGACATCCTGTATTCTAAGGACTTAATTGCAACTGGCGGTATTGATATGAATGCTGTTATTTTTGACAGACCATCAGGACAAATATTATCTACACTCAGTGGTCATTCTAAAAAGGTAACCAGCGTAAAGTTTGTAGCTCAGGGCGAATCGTTATTAACCAGTTCAGCAGATAAGACGGTTCGTGTGTGGCAAGGCTCGGAGGATGGTAACTATAACTGCAAACACATCCTGAGGGATCATACAGCTGAGGTACAAGCTGTCACTGTCCATGCCACCAATAACTACTTTGTGACTGCTTCACTTGATGGCACTTGGTGCTTTTATGATCTGTCTTCAGGAACATGTCTGACTCAGGTTGCAGACACTTCAGGTTCTTCTGAAGGCTATACTTCTGCAGCTTTTCATCCTGATGGGCTCATTATTGGAACTGGCACCACAGATGCTCTTGTTAAGATCTGGGATGTAAAAAATCAGTCAAATGTTGCTAAATTTGATGGACATACAGGATCAGTAACTGCCATATCCTTCTCTGAGAATGGGTACTTCCTTGCGACTGCAGCTCATGATGGTGTAAAGCTTTGGGATCTACGCAAATTAAAGAACTTCCGAAATTTTGCTCCGTATGACTCAGAAACTCCGACAAACTCAGTTGAGTTCGATCACAGTGGATCTTACCTTGCAGTTGCAGGCTCTGATATCAGGATTTACCAAGTCGCAAATGTGAAATCTGAATGGAACTGTATCAAAACTTTCCCAGATTTATCTGGAACAGGGAAAGTCACCTGTGTAAAATTTGGTCCAGATTCAAAATACATAGCAGTGGGGTCAATGGATCGGAATCTTCGAATATTTGGCCAACCTAGTGAAGATACTCCAACCGAGTCGTAA 1575 0.4362 MNCSISGEVPEDPVVSKKSGLLFEKRLIETHIADYGKCPITGEPLTLDDLVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLATAERPFPVSANAIPANVSGLSNGKRAAEDDEMAHGGKKMHPGITSAIISELTDCNAALSQQRKKRQISTTLAPVESIEAYTQISSHPFHKTNKPGITSLDILYSKDLIATGGIDMNAVIFDRPSGQILSTLSGHSKKVTSVKFVAQGESLLTSSADKTVRVWQGSEDGNYNCKHILRDHTAEVQAVTVHATNNYFVTASLDGTWCFYDLSSGTCLTQVADTSGSSEGYTSAAFHPDGLIIGTGTTDALVKIWDVKNQSNVAKFDGHTGSVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRNFAPYDSETPTNSVEFDHSGSYLAVAGSDIRIYQVANVKSEWNCIKTFPDLSGTGKVTCVKFGPDSKYIAVGSMDRNLRIFGQPSEDTPTES* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1252 524 SUPERFAMILY RING/U-box 1 53 - -
Amo12g1252 524 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 261 293 - -
Amo12g1252 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 393 433 IPR001680 GO:0005515
Amo12g1252 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 306 347 IPR001680 GO:0005515
Amo12g1252 524 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842|GO:0016567
Amo12g1252 524 SUPERFAMILY WD40 repeat-like 221 513 IPR036322 GO:0005515
Amo12g1252 524 CDD WD40 225 513 - -
Amo12g1252 524 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Amo12g1252 524 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 393 426 - -
Amo12g1252 524 Pfam WD domain, G-beta repeat 255 292 IPR001680 GO:0005515
Amo12g1252 524 Pfam WD domain, G-beta repeat 389 424 IPR001680 GO:0005515
Amo12g1252 524 Pfam WD domain, G-beta repeat 474 513 IPR001680 GO:0005515
Amo12g1252 524 Pfam WD domain, G-beta repeat 301 338 IPR001680 GO:0005515
Amo12g1252 524 Gene3D - 200 515 IPR015943 GO:0005515
Amo12g1252 524 SMART WD40_4 473 514 IPR001680 GO:0005515
Amo12g1252 524 SMART WD40_4 386 424 IPR001680 GO:0005515
Amo12g1252 524 SMART WD40_4 299 338 IPR001680 GO:0005515
Amo12g1252 524 SMART WD40_4 427 466 IPR001680 GO:0005515
Amo12g1252 524 SMART WD40_4 341 383 IPR001680 GO:0005515
Amo12g1252 524 SMART WD40_4 209 251 IPR001680 GO:0005515
Amo12g1252 524 SMART WD40_4 254 293 IPR001680 GO:0005515
Amo12g1252 524 ProSitePatterns Trp-Asp (WD) repeats signature. 370 384 IPR019775 -
Amo12g1252 524 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 523 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Amo12g1252 524 Pfam Prp19/Pso4-like 66 130 IPR013915 -
Amo12g1252 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 351 392 IPR001680 GO:0005515
Amo12g1252 524 SMART Ubox_2 1 66 IPR003613 GO:0004842|GO:0016567
Amo12g1252 524 MobiDBLite consensus disorder prediction 147 169 - -
Amo12g1252 524 CDD RING-Ubox_PRP19 3 54 - -
Amo12g1252 524 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 351 386 - -
Amo12g1252 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 293 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1252 Amo-Chr12 43169209 43179916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1252 1 524 U-box Gene Family AT1G04510 73.092 0.0 808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1252 K10599 - gmx:100527039 959.903