Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1242 ATGGGTTGTGAGATGGAATTGGAGAGTGAATGTATTGAGGACATGGAAGTTGAAGTCCTGCCTTCAATGTGGCCGGAAGATATCGGAACAGACGCCGGAAAGCAGTTCAATATAGAGAAGCCTGGCAGGGATCAAGACATGTTGGAAGAAGTTACAATCATGGAGGAACCAACCATAGCTGATTTCCAGCGATTAATGGAGCTAACTAACTATACAGARAGAGGTTCTTCACAATTGGCCTACTTAATGAAACATTGGGAGTATAAGCAGGCCAACGCCGTTCGCCTTCTTAGAGAAGAACTCGACAACTTGAGCAGGCAAAGGCAGGAAGTTGAGCAAAGGAGGCTGGAGATATTGCAAGAGAATCGYTTRGAGGAAGACTATGGAGATGATAAGAGGCCYGTTTCTATATTGGATGAAGTTTATTACACTTGGCAGGATCTGCCAAGCCGGAAAAGTGATGTTGTTGTGCAGAACAAGAGGATTGAGATTGATGCAGAGTATGATACTGTTGTATACTGGAAGCAGCGCGCGCTGCAGCTGGAAAAACAGTTGGAGGCGAGTATGCAGCGCGAGCAGACGCTTATGGATAAGTTGCAAGAAAGCATTAAGACTATTGAGAGGCAGTCCTCGCCGGTTGAAGAGTTGTCGCAGATTCTGAAGAGAGCTGATAATTTCTTGCATTTTATACTTCAAAATGCACCTGTTGTCATTGGTCACCAGGACAAAGAGTTGCGCTATCGCTTTATCTATAATCACTATCCAAGATTGCAAGAGGAGGACATCATAGGAAAAACAGATGTCGAAATTTTCACAGGTTCCGGTGTAAAAGAATCTCAAGATTTTAAGAGAGAAGTTATGGAGAAAGGATTACCTGCAAAAAAGGAAATCACATTCGAGACAGATCTATTCGGGTCYAAAACATTCTTGATATATGTAGAACCTGTGTTTAGCAAGGCAGGTGAAACAATAGGAATAAATTACATGGGAATGGAAATAACAGATCAGGTGAGAAAAAGAGAAAGGATGGCGAAGCTTCGMGAAGAGATTGCMGTTCAGAAAGCAAAGGAGACTGAACTGAATAAAACCATTCATATTACAGAGGAGACTATGAGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCACCMTTGTCCGGGGTTGTGAGCATGGCTGAGATTCTTTCTACGACAAAACTTGATCGCGAGCAGAGACAACTCTTGGATGTCATGATATCTTCAGGAGATTTGGTTCTTCAACTCATAAATGACATTCTTGATCTTTCCAAGGTTGAGTCAGGAGCTATGAAATTGGAAGCCACGAAATTCCGGCCGAGAGAGGTAGTAAAGCATGTACTTCAAACAGCAGCTGCATCATTGCAGAAAATGCTAACCTTAGAAGGGAACGTGGCAGATGACATACCTATTGAGGTCATTGGAGATGTGTTAAGAATTCGTCAGATTCTCACAAATTTAGTCAGCAATGCTGTGAAGTTTACACATGAAGGCAAAGTTGGAATAAACCTTTATGTTGTGACAGAGCCACCATTTGCCAAAACAGAGGAATGCAATCAAAAGATGAACTCAGAACAATCAACAACTTGTTCAAATGGAGTGAAGGATCATAGATATCKATCAACACTAGCTAAGAGTGGCAGTGATCAAAATCATCATGGCAGTGATCACGCGTTTAACAACGAATTTCGATCTTCAGTTAAGAGTGATTACTCAATGAATGGTGGTGACACTYAGGAGGAAAATCACTCAACTGAAACAACAGTGTGGATTCGTTGCGATGTGTATGACACTGGAATTGGAATACCAGAAAAGGCCATACCTACTTTATTCAAAAGATACATGCAAGTSAGTGCAGATCACGCTCGAAAYTATGGAGGCACYGGACTCGGATTAGCAATATGCAAACAACTGGTTGAGTTAATGGGAGGTCGTCTAACAGTATCAAGCAAAGAACACGTTGGATCTACCTTCACATTCATACTTCCGTACAAAGTTTCAATWGCTTCTGATGAAAACTCCGACGACACCGACGAACTCTCCGATGTGGACAACAATGAKGCCGTTTCCGACGATTTAACAGAAGGCTTCTTCCAATTCCAACCCCGCACTTTAGGATCTCTCTTCTCTTCCAATGGATCCACAAGGCGAACCTCGCACAAGTTCAACGGATTTCCGCCCAATCCTTTCTCATTGCCATCTCCAAACGCCATCGCTTCCAAAGCGATAACGAATTCCGTTGAAGATTCATCTTCCGTTGTTGTTGATGCTTCGGATCTGACAGAATCAACGAGTTCATCGACGACCGAAGAAAAAGATCYTCGTGAACATTCKGCSAAATCGCGGCACGAGCCTTCGTCACATAGTAACGGTTGTGATGATTCTTCGAAACAAATGAATGAATCAAGAAAGTCATCGTGTGAGGGTTTGATGAAGAAGGAAGATGCGAATTCGCAATGTGTTACTAGCAGCAGTGCATCGCCGACGGAAGAGACTAAAGATTCTTCTAAATTGAAGCCTAAGATTCTTCTTGTTGAAGATAACAAGATCAATGTGATGGTGACACAGTCAATGATGAAGAGGTTAGGGTATAGCATGGATGTTGTTAACAATGGAGTGGAAGCCGTTCGTGCCGTTCAGCGTCACACTTATGACATCATTCTCATGGACGTTTTCATGCCAGTTATGAACGGTCTTCAGACGACGAAACTGATTCGATCTTATGAGGAAACTGGAAACTGGGATGCTGCAAAAAATTCTGGAATTGAACAAATACAACAAATTTCAGATTATGAATGTTGTGTACCACCTAGAAAGCGGATCCACATTATTGCGATGACAGCAAACACAGTAACAGAGAGTGCAGAGGAATGTTATGCAAATGGTATGGARTCATTTGTGTCAAAACCTGTGACMTTCCAAAAATTGAAAGAATGTCTTGAACAGTACCTAAGGTGA 2982 0.4192 MGCEMELESECIEDMEVEVLPSMWPEDIGTDAGKQFNIEKPGRDQDMLEEVTIMEEPTIADFQRLMELTNYTERGSSQLAYLMKHWEYKQANAVRLLREELDNLSRQRQEVEQRRLEILQENRLEEDYGDDKRPVSILDEVYYTWQDLPSRKSDVVVQNKRIEIDAEYDTVVYWKQRALQLEKQLEASMQREQTLMDKLQESIKTIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHYPRLQEEDIIGKTDVEIFTGSGVKESQDFKREVMEKGLPAKKEITFETDLFGSKTFLIYVEPVFSKAGETIGINYMGMEITDQVRKRERMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRQLLDVMISSGDLVLQLINDILDLSKVESGAMKLEATKFRPREVVKHVLQTAAASLQKMLTLEGNVADDIPIEVIGDVLRIRQILTNLVSNAVKFTHEGKVGINLYVVTEPPFAKTEECNQKMNSEQSTTCSNGVKDHRYXSTLAKSGSDQNHHGSDHAFNNEFRSSVKSDYSMNGGDTXEENHSTETTVWIRCDVYDTGIGIPEKAIPTLFKRYMQVSADHARNYGGTGLGLAICKQLVELMGGRLTVSSKEHVGSTFTFILPYKVSIASDENSDDTDELSDVDNNXAVSDDLTEGFFQFQPRTLGSLFSSNGSTRRTSHKFNGFPPNPFSLPSPNAIASKAITNSVEDSSSVVVDASDLTESTSSSTTEEKDXREHSAKSRHEPSSHSNGCDDSSKQMNESRKSSCEGLMKKEDANSQCVTSSSASPTEETKDSSKLKPKILLVEDNKINVMVTQSMMKRLGYSMDVVNNGVEAVRAVQRHTYDIILMDVFMPVMNGLQTTKLIRSYEETGNWDAAKNSGIEQIQQISDYECCVPPRKRIHIIAMTANTVTESAEECYANGMESFVSKPVTFQKLKECLEQYLR* 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1242 993 MobiDBLite consensus disorder prediction 717 744 - -
Amo12g1242 993 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 426 672 IPR036890 -
Amo12g1242 993 Coils Coil 343 363 - -
Amo12g1242 993 Gene3D - 438 678 IPR036890 -
Amo12g1242 993 Coils Coil 182 209 - -
Amo12g1242 993 CDD HATPase_EvgS-ArcB-TorS-like 488 671 - -
Amo12g1242 993 SMART REC_2 848 988 IPR001789 GO:0000160
Amo12g1242 993 SMART HKATPase_4 483 674 IPR003594 -
Amo12g1242 993 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 8 992 - -
Amo12g1242 993 Gene3D - 841 993 - -
Amo12g1242 993 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 437 IPR036097 GO:0000155|GO:0007165
Amo12g1242 993 PRINTS Bacterial sensor protein C-terminal signature 634 652 IPR004358 GO:0016310|GO:0016772
Amo12g1242 993 PRINTS Bacterial sensor protein C-terminal signature 599 613 IPR004358 GO:0016310|GO:0016772
Amo12g1242 993 PRINTS Bacterial sensor protein C-terminal signature 658 671 IPR004358 GO:0016310|GO:0016772
Amo12g1242 993 SMART HisKA_10 372 437 IPR003661 GO:0000155|GO:0007165
Amo12g1242 993 MobiDBLite consensus disorder prediction 717 733 - -
Amo12g1242 993 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 483 672 IPR003594 -
Amo12g1242 993 CDD REC_hyHK_CKI1_RcsC-like 850 988 - -
Amo12g1242 993 Gene3D - 360 437 - -
Amo12g1242 993 MobiDBLite consensus disorder prediction 774 798 - -
Amo12g1242 993 Pfam His Kinase A (phospho-acceptor) domain 374 437 IPR003661 GO:0000155|GO:0007165
Amo12g1242 993 Pfam Response regulator receiver domain 850 918 IPR001789 GO:0000160
Amo12g1242 993 SUPERFAMILY CheY-like 848 993 IPR011006 -
Amo12g1242 993 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 8 992 - -
Amo12g1242 993 MobiDBLite consensus disorder prediction 805 819 - -
Amo12g1242 993 ProSiteProfiles Histidine kinase domain profile. 379 674 IPR005467 -
Amo12g1242 993 ProSiteProfiles Response regulatory domain profile. 849 992 IPR001789 GO:0000160
Amo12g1242 993 MobiDBLite consensus disorder prediction 762 820 - -
Amo12g1242 993 Coils Coil 94 121 - -
Amo12g1242 993 Gene3D PAS domain 213 349 - -
Amo12g1242 993 CDD HisKA 371 433 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1242 Amo-Chr12 41413597 41420258 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1242 1 992 Histidine Kinase Gene Family AT5G10720 59.256 0.0 1117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo12g1242 HATPase_c 7.8e-28 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1242 - - gmx:100801640 1476.46