Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1238 ATGGGAACCGAAATCACTGCTCTTAAACGAATTTACGTTTACCGCTGCATGAAGGGCTCTCTCCTCAACCTCCTCATAGAGGAGTTACGTCACACTGCTCTCATTCATGAAGACATGCTCCATAAACTCGAAGTTCTCGAAGAACTCGATTATCGCTTAGGCTCTCCCGTTTCCGCTTCCTTCTCCGCTGCCTATTGTGCCGTCGCTGTGGAATGCACGCTCAAGTACCTTGGCACGTGCTCTTCACGTGACGTCATATCCAACAAATCTGCATATGTAAACGCCATAAACGGGATCTGGCGTGGTCACATTCCGTGTATGGAATCCTCCTCCTCCTCGGGCGTCGGGTGCCGACTGTACACGGCGGAGCTGAAGCGGTGGAGGGATGACATTGAGGCTTCGCTTTCGGATCCCAAGGTTTTGAAGAGGTTGGAAAGCTATAATGGTAGGGAAGATGCCATTTGGAAGCTTAAGCTTTATTTGCTTGAAGCCTCAGCAAACTTGGCTCCTTATTTTGATGAAATAGCATTATTCGCTGATTTATACGGTAACAACTGTCAAACCCATGAGCTTGATGGCGATAAACAGGAACCTAGTGCGCTTGCTTTCCTCCAAAGAGTGAACAATAGGAATGTGGAGGAGCTTCCTATTGAAAAACAAACTACAGAAGCACCGAAAGAAAATTGGGATACAGAAGCAACTTTTGGTATTCAGAGAACAGAACCACCAAATGAAGAAAATGAGATCACAGAAGAAGCACGAAATGAAAATCAAACTAAGGAAGCTCCATCAGAAATTCAGACTACTGAATCACGGGTCGAAAATATGATCACTGAAGAGGCACCAAGTGAAATTCAGACCGAGGAAGCCCTAATTGAAAATCAGATAACAAAAGAAGCATCGAATGAAAATCAAACTAAGGAAGCCCTAATTGAAAACCAGATTTCTGAAGCACTGATTGAAAATATGATCACTGAAGAAGCACCAAGTGAAATTCAGACTGAGGAAGCCCTAATTGAAAATCAGACTTCTGAAGCACTGATTGAAGATATGATCACTGAAGAAGCACCAAGTGAAATTCAGACTGAGGAAGCCCCGATTGAAAATCAGACTACTGAAGCACTGATTGAAAATCAGATAACAAAAGAAGCATCGGATGAAAATCAAACTAAGGAAGCCCTAATTGAAAACCAGACTACTGAACTGATTGAAAATCAGGTTACAGAAGAAGTGCCAAATGAAAATCGGACTGAGGAATCCCCAATTGAAAATCAGATCATAGAAGAAGCACTGGATGAAAATCAAACTAAAGAATCCCCAAGTGAAAATCAGACTACTGAAGCACTGATTGTAAACCAGATCACAGAAGAAGCACCAAATGAAAATCAGACTAAGGAGGCCCCAATTCATAAGATTGCAGGTGCACCAACTGGAAATGTGGGTGCAGATACAGATTTATGTGATCAACATGGTTTTGCAACTGCTTCTGCTGAAGAGTGTAATGAATCAGAACAGGGTTTGGATGGAGCATCAGATCATGCCACCAAGTTTCATTTGCCTAGCCCCAAGAAATGGAAAATCTCTCCATTGAGAAAATATGAACCACAGGACATAATAATAAGGAGGAAAAAGAAAAGATGGAGTGAGTTTGAAGAAATAACACTGAGGTCTGCTGTGAATCAGTATGGTGAAGGAAACTGGAAGTTAATCCTTAGTACTCACATTGATGTATTTGAAGAGAGAACTGATGTTGATTTGAAGGATAAATGGAGAAACCTCAAGCATCATCGAGCTAATTAG 1800 0.4194 MGTEITALKRIYVYRCMKGSLLNLLIEELRHTALIHEDMLHKLEVLEELDYRLGSPVSASFSAAYCAVAVECTLKYLGTCSSRDVISNKSAYVNAINGIWRGHIPCMESSSSSGVGCRLYTAELKRWRDDIEASLSDPKVLKRLESYNGREDAIWKLKLYLLEASANLAPYFDEIALFADLYGNNCQTHELDGDKQEPSALAFLQRVNNRNVEELPIEKQTTEAPKENWDTEATFGIQRTEPPNEENEITEEARNENQTKEAPSEIQTTESRVENMITEEAPSEIQTEEALIENQITKEASNENQTKEALIENQISEALIENMITEEAPSEIQTEEALIENQTSEALIEDMITEEAPSEIQTEEAPIENQTTEALIENQITKEASDENQTKEALIENQTTELIENQVTEEVPNENRTEESPIENQIIEEALDENQTKESPSENQTTEALIVNQITEEAPNENQTKEAPIHKIAGAPTGNVGADTDLCDQHGFATASAEECNESEQGLDGASDHATKFHLPSPKKWKISPLRKYEPQDIIIRRKKKRWSEFEEITLRSAVNQYGEGNWKLILSTHIDVFEERTDVDLKDKWRNLKHHRAN* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1238 599 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 539 598 IPR017930 -
Amo12g1238 599 Pfam Myb-like DNA-binding domain 544 594 IPR001005 -
Amo12g1238 599 SMART sant 543 596 IPR001005 -
Amo12g1238 599 ProSiteProfiles Myb-like domain profile. 539 594 IPR001005 -
Amo12g1238 599 MobiDBLite consensus disorder prediction 244 259 - -
Amo12g1238 599 MobiDBLite consensus disorder prediction 238 269 - -
Amo12g1238 599 SUPERFAMILY Homeodomain-like 541 594 IPR009057 -
Amo12g1238 599 MobiDBLite consensus disorder prediction 397 424 - -
Amo12g1238 599 PANTHER MYB TRANSCRIPTION FACTOR 15 595 - -
Amo12g1238 599 CDD SANT_TRF 545 595 - -
Amo12g1238 599 Gene3D - 539 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1238 Amo-Chr12 41123150 41125919 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1238 510 593 Single Myb Histone (SMH) Gene Family AT1G15720 41.667 5.54e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo12g1238 Myb_DNA-binding 6.3e-09 CL0123