Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1230 ATGGAACGCGGTGTTCTTGATGGTATCATCAGTAGGTTGCTTGATGTTAGAGGAAGACCTGGGAAACAGGTGCAGCTTTCTGAGGCAGAAATCAAGCAGCTTTGTGTAGTTTCCAAAAATATCTTCTTAAGGCAGCCCAATCTCTTGGAACTAGAGGCTCCAATTAAGATATGTGGAGATGTCCATGGTCAATATCCCGACCTTCTAAGACTCTTCGAGCATGGCGGATTTCCTCCTCGGTCCAACTACTTATTTTTAGGAGATTATGTGGATCGTGGGAAGCAAAGTTTGGAGACAATATGTCTTCTTTTAGCATACAAGATAAAATATCCAGAAAATTTTTTCCTTCTTAGGGGTAACCACGAATGTTCTTCTATAAGCCGTATTTATGGATTCTATGACGAATGTAAAAGGAGGTTCAATGTTAGGATGTGGAAAACATTTACAGATTGTTTTAACTGCTTGCCCCTGGCCGCTCTCATTGATGATAAGATAATATGTATGCACGGCGGACTCTCGCCGGACTTGCGTAATCTAAACCAAATAAGGAGCCTGCCTCGTCCGACCGAAGTCCCCGAAATCGGCTTGCTGTGTGACCTTCTTTGGTCTGATCCTTGTGGAGACATTGAGGGTTGGGGAGCCAACGAACGCGGAGTTTCATATACTTTTGGAGCTGATAGGGTCACACAGTTTCTCGAAAAGCATGATCTTGACTTGATTTGTCGAGCTCATCAGGTTGTTGAAGATGGATATGAATTCTTTGCTAATAGACAACTTGTGACTATCTTTTCAGCACCCAATTATTGTGGAGAGTTCGATAATGCTGGCGCAATGATGAGCGTTGACGAGACACTTATGTGCTCTTTCCAAATATTAAAGCCAGTTGAGAAAAGGCCTAAGTTCAGTTTCGCGAGCACCAGCGCAGTTAAGTCTAGCACTCCGACCAAAATCAAGGCATTTCTTGGTGGTAAAGTATGA 978 0.4315 MERGVLDGIISRLLDVRGRPGKQVQLSEAEIKQLCVVSKNIFLRQPNLLELEAPIKICGDVHGQYPDLLRLFEHGGFPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECSSISRIYGFYDECKRRFNVRMWKTFTDCFNCLPLAALIDDKIICMHGGLSPDLRNLNQIRSLPRPTEVPEIGLLCDLLWSDPCGDIEGWGANERGVSYTFGADRVTQFLEKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPVEKRPKFSFASTSAVKSSTPTKIKAFLGGKV* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1230 325 SMART pp2a_7 26 296 IPR006186 GO:0016787
Amo12g1230 325 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Amo12g1230 325 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 318 - -
Amo12g1230 325 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Amo12g1230 325 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Amo12g1230 325 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Amo12g1230 325 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Amo12g1230 325 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Amo12g1230 325 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Amo12g1230 325 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Amo12g1230 325 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Amo12g1230 325 SUPERFAMILY Metallo-dependent phosphatases 18 299 IPR029052 -
Amo12g1230 325 CDD MPP_PP1_PPKL 5 294 - -
Amo12g1230 325 Gene3D - 2 305 IPR029052 -
Amo12g1230 325 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Amo12g1230 325 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1230 Amo-Chr12 40639468 40651372 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1230 33 239 Calmodulin-binding Proteins AT5G63870 31.325 2.58e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1230 K06269 - cit:102610648 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g1230 12 40639468 40651372 Amo02g1445 02 36010194 36015016 hybridization