Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1221 ATGTCAAATATGGATCTGCAATGTCAGCCATGCAGGCACTTGATCACAACTGGATGGAGTACTTTTGTAGCTTCGAAGAGATTAGTCGTCGGAGACACCTTTGTGTTTCTGAGAGGACACAACGGAGAGTTATGTGTTGGACTGAGGCATAATACTTCTCAGCCAAGCAGCATGCCTTCATCTATGATTTCCAGTCAGAGCATGCATCTTGGAGTACTTGCAACTGCATCTCATGCTGTTGTAACTCAGACTCTTTTTGTTGTATATTACAAGCCAAGGTAG 282 0.4362 MSNMDLQCQPCRHLITTGWSTFVASKRLVVGDTFVFLRGHNGELCVGLRHNTSQPSSMPSSMISSQSMHLGVLATASHAVVTQTLFVVYYKPR* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1221 93 SUPERFAMILY DNA-binding pseudobarrel domain 9 51 IPR015300 -
Amo12g1221 93 ProSiteProfiles B3 DNA-binding domain profile. 1 52 IPR003340 GO:0003677
Amo12g1221 93 PANTHER AUXIN RESPONSE FACTOR 11 8 93 - -
Amo12g1221 93 Gene3D - 2 51 IPR015300 -
Amo12g1221 93 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 93 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo12g1221 93 Pfam B3 DNA binding domain 8 50 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1221 Amo-Chr12 39631927 39632403 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1221 9 93 B3 DNA Binding Superfamily AT3G61830 74.118 1.84e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo12g1221 B3 8.6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1221 K14486 - pvy:116139366 132.109