Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1193 ATGGCGCACCGCTTGCTGAGGGACCATGAAGCTGACGGGTGGGAGCGCGCAGACTTCCCTATCATCTGCGAGTCCTGCCTTGGCGACAACCCTTACGTTCGAATGACAAGAGCTGAGTATGACAAGGAATGCAAGATTTGTACACGGCCATTTACTGTTTTCAGATGGAGACCTGGTCGGGATGCGAGGTATAAAAAGACTGAGATCTGCCAGACATGTAGTAAGTTGAAAAATGTCTGTCAAGTGTGTCTTCTGGATCTAGAATACGGGCTGCCAGTTCAAGTCCGTGACACAGCTCTCAGTATTGATTCCAATGATGCCATTCCAAAAAGTGATGTCAATAGGGAGTATTTTGCTGAAGAGCACGACCGCAAGGCTAGAGCTGGTATAGATTACGAATCTTCTTATGGTAAAGCACGCCCAAATGATACTATCTTGAAGCTACAAAGGACAACACCATATTACAAAAGAAACCGGGCACATATTTGCAGTTTCTACATAAGGGGTGAATGTACTAGAGGAGCTGAATGCCCTTATCGGCATGAGATGCCAGTAACTGGGGAGCTGTCTCAACAAAATATTAAAGATCGTTATTATGGTGTCAATGATCCTGTGGCTTTGAAGCTACTTGGCAAGGCTGGAGAGATGACGTCTCTGGAGGCTCCCGAGGATGAGAGCATCAAAACCCTTTATGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGACTTGCGGGATCACTTCTATGCGCATGGTGAAATTGAATCTATAAAAATGGTTCTTCAACGGGCTTGTGCTTTTGTAACCTATACAACCAGAGAAGGTGCAGAAAAGGCAGCCGAAGAACTATCCAACAAGCTGGTTATTAAAGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGACAGCAAAACCGGAGTCAGATGGCTCTGATCAAGCAAGGCAGCAAGCAGCTGTGGCTCACAGTGGGTTGTTGCCTCGTGCAGTTATATCGCAACAGCAGAACCAGGATCTAGGCCAAGGAATGCCTTACTATAACAATCCACCTCCTCCTCAGCAAGAAAGAAGCTATTACCCTTCAATGGATCCTCAAAGAATGGGTGCTCTTATTCCATCTCAAGAGGGTCCTCCSGGTGGACCTAGTGGATCAGGTGAGAACAAACCCAGTAYGGAGAAGCCACAAATGCAACAACATTATACCCATCCAATGATGCCTCCTCCTCCTCCTGGCCAATATCATCATCAGCCTCCTCATCAGTATTATCCTCCTCCATATGGTTATATGCCACCAGTTCCCCCWTATCAGCARTATCCACCACCATATAGTKCTCAAATGGTGCCATCTCAGCCACCAGCTGCAAATCATCCATATCACCATCATCCGATGCAGCCAGGTTCTTCACAAACAGGRTCTGGACAGGTTGGCTCTGGATCTGCACCAGCTGAAGCTGGAACATCAGCATCAGGGTCACAGCAGCAGTGA 1485 0.4741 MAHRLLRDHEADGWERADFPIICESCLGDNPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAEEHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMTSLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTAKPESDGSDQARQQAAVAHSGLLPRAVISQQQNQDLGQGMPYYNNPPPPQQERSYYPSMDPQRMGALIPSQEGPPGGPSGSGENKPSXEKPQMQQHYTHPMMPPPPPGQYHHQPPHQYYPPPYGYMPPVPPYQQYPPPYSXQMVPSQPPAANHPYHHHPMQPGSSQTGSGQVGSGSAPAEAGTSASGSQQQ* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1193 494 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Amo12g1193 494 Gene3D - 149 209 - -
Amo12g1193 494 Gene3D - 212 309 IPR012677 -
Amo12g1193 494 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Amo12g1193 494 SUPERFAMILY RNA-binding domain, RBD 221 309 IPR035979 GO:0003676
Amo12g1193 494 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 466 IPR039171 GO:0003723
Amo12g1193 494 SMART rrm1_1 229 297 IPR000504 GO:0003723
Amo12g1193 494 MobiDBLite consensus disorder prediction 328 343 - -
Amo12g1193 494 MobiDBLite consensus disorder prediction 300 494 - -
Amo12g1193 494 MobiDBLite consensus disorder prediction 401 447 - -
Amo12g1193 494 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Amo12g1193 494 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE 1 466 - -
Amo12g1193 494 MobiDBLite consensus disorder prediction 462 494 - -
Amo12g1193 494 CDD RRM_RBM22 227 300 - -
Amo12g1193 494 Pfam Torus domain 138 194 IPR032297 -
Amo12g1193 494 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Amo12g1193 494 SMART c3hfinal6 157 183 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1193 Amo-Chr12 37869135 37874024 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1193 220 289 Eukaryotic Initiation Factors Gene Family AT1G49760 34.667 7.38e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1193 K12872 - gmx:100779917 753.051