Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1176 ATGATAACTATTGAGGAAATAGATGGGATGGATGTCATCTGTAGTGACAAAACTATAACCTTGACATTGAATAAGCTTAGTGTTGATAGAAACTTGATTGAGGTATTTGCTAAGGGTGTTGAGAAGGAGTATGTTATCCTTCTTGCTGCAAGGGCCTCTAGGACCGAAAATCAGGATGCTATAGATGCTGCAATTGTTGGGAAGCTTGCTGATCCAAAGGAGGTCCATTTTCTTCCATTCAATCATGTAGACAAGAGAACTGCTCTAACTTACATTGATTCTGATGGAAATTGGCACCGTGTGAGCAAAAGGGCTCCAGAGCAGATCATAACCCTTTGCAACTGCAAAGAGGATGTCGGGAAGAAGGTTCATGCAATGATTGATAAGTTCACTGAGCGTGGACTTCAGTCTTTAGGTGTTGCAAGATTCATATTGTAA 438 0.4087 MITIEEIDGMDVICSDKTITLTLNKLSVDRNLIEVFAKGVEKEYVILLAARASRTENQDAIDAAIVGKLADPKEVHFLPFNHVDKRTALTYIDSDGNWHRVSKRAPEQIITLCNCKEDVGKKVHAMIDKFTERGLQSLGVARFIL* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1176 145 Gene3D - 26 142 IPR023299 GO:0000166
Amo12g1176 145 PANTHER PLASMA MEMBRANE ATPASE 1 142 - -
Amo12g1176 145 PANTHER CALCIUM-TRANSPORTING ATPASE 1 142 - -
Amo12g1176 145 Gene3D - 11 25 IPR023214 -
Amo12g1176 145 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 20 143 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1176 Amo-Chr12 36986901 36987527 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1176 1 142 Primary Pumps ATPases AT2G24520 75.839 1.39e-74 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1176 K01535 - gmx:100794372 244.973