Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1172 ATGGAGACAAGGGTTCCCTCCTTCTACTTCTTCCTCTTTTCTCTCTCATTACTGCTACTTCTTCTCTTCCCTTTTTCTTCAGCTCAGATGCCAGGTTTCATAAGTTTGGACTGTGGAGGTAACGAAAACTTCACTGATGAAATTGGTATCGAATGGACTCCTGATGACAAACTGACTTTCGGAGAAATAAGCACTATATCGGTTGTGAATGAGACACGAAAGCAATACACAACGCTTCGACACTTTCCGGCAGATTCCAGGAAATACTGCTACTCGCTTGATGTTGACAGTAGAACAAGATACCTGCTGAGGGCATCATTCTTGTATGGGAACTTTGATAATAACAATGTTTATCCGAAATTCGACATTTCTGTTGGAGCAACTCATTGGTCTACTATTGTTATATCTGATGCTGACACTATTGAAGTGATAGAGCTTATCTTTCTGGCTACAAGTCCTACAGTTAGTGTATGTTTATCAAATGCAACAACTGGGAAGCCGTTTATTTCTACACTTGAACTCCGGCAATTCAATGGTTCTGTTTATTATACAGAAATCGAGGAACAATATTACCTCAGTGTCTCTGCTAGGATCAATTTTGGTGCTGAGAGTGATGCTCCTGTCAGGTATCCTGATGATCCATTCGATAGAATTTGGCAGTCAGATTCTATCAAGAAAGCCAATTATCTTGTCGATGTTGCTGCCGGAACTCAGAAAATTTCAACCAATATGTCAATTGATGTTAACAGAGATGAAATGCCACCAGTAAAAGTAATGCAGACAGCTGTAGTCGGTACAAACGGGTCCTTAACTTACCGGCTAAACTTGGATGGTTTTCCTGGTATGGGTTGGGCTTTCACCTATTTTGCAGAGATTGAAGATTTGCTAGAAAATGAATCAAGAAAATTCAGGCTAGTACTTCCAGGCCACAATGATATGAGCAAGGCTGTGGTAAATATCGAAGAAAATGCTCAAGGGAAATATCGCCTTTACGAACCAGGATATACCAATTTATCCTTACCATTCGTGCTGTCCTTTAGATTTGTCAAGACATCTGATTCTACCAGGGGCCCTCTTCTAAATGCCATGGAGATAAATAAATATCTAAAGAAAAGTGATGGTTCTCCTGATGGTGATACTATATCTGCCGTACTTTCGCACTACTCTTCCGCAGACTGGGCTCAAGAAGGGGGTGACCCTTGCCTACCTGCTCCATGGTCATGGGTCCGCTGTAGCTCAGATCCACAGCCAAAAATTGTTTCAATTTTATTGTCAGGTAAAAACTTGACAGGCAATATTCCGTTGGACATTACCAAGTTGACTGGTCTTGTTGAAATATGGCTTGATGGAAATATGTTGACTGGTACAATACCGGATTTTACTGGATGCATGGACTTAAAGATCATTCATCTTGAAAACAACCACTTAACAGGTCAATTACCTTCCTCTCTGGTGAACCTTCCGAATTTGAGGGAATTGTATGTGCAAAATAATATGTTATCTGGAACAATACCTTCAGACCTTCTGAGTGAAGATTTGGTCATAAATTACTCTGGAAACATTGATCTTCATAAGAAAAGTGGAAAACAAAGCCATATGATTGTAATCATAGGTTCATCTGCTGGCGCTGCGGTTCTTCTTCTGGCAACTATCATCTCTTGCTTGTTTTTGCGTAAAGGAAAGAAAAAATATTATGAGCAAGACAAACTTGTCTCTCGCCCATCTCAAAGTATTGGTTCTACCATGAGTGAAGGTCCTTCAAACGCAGAAGCTGCTCACTGCTTCAGTTTTTCTGAAATTGAAAGTTCAACCAATAACTTCGAGAGAAAAATTGGTTCCGGCGGTTTTGGAGTTGTTTACTATGGGAGACTGAAAGATGGAAAAGAGATAGCAGTTAAAGTTCTAACCAGTAATTCCTACCAAGGCAAACGAGAGTTCTCCAATGAGGTTACTCTTCTATCAAGAATACATCACAGAAACTTGGTACAGCTTCTCGGTTATTGCCGCGAAGAAGGGAATAGCATGCTTATTTATGAGTACATGCATAACGGGACTCTCAAAGAACATCTTTATGGTAAGCCCAGATGA 2088 0.4033 METRVPSFYFFLFSLSLLLLLLFPFSSAQMPGFISLDCGGNENFTDEIGIEWTPDDKLTFGEISTISVVNETRKQYTTLRHFPADSRKYCYSLDVDSRTRYLLRASFLYGNFDNNNVYPKFDISVGATHWSTIVISDADTIEVIELIFLATSPTVSVCLSNATTGKPFISTLELRQFNGSVYYTEIEEQYYLSVSARINFGAESDAPVRYPDDPFDRIWQSDSIKKANYLVDVAAGTQKISTNMSIDVNRDEMPPVKVMQTAVVGTNGSLTYRLNLDGFPGMGWAFTYFAEIEDLLENESRKFRLVLPGHNDMSKAVVNIEENAQGKYRLYEPGYTNLSLPFVLSFRFVKTSDSTRGPLLNAMEINKYLKKSDGSPDGDTISAVLSHYSSADWAQEGGDPCLPAPWSWVRCSSDPQPKIVSILLSGKNLTGNIPLDITKLTGLVEIWLDGNMLTGTIPDFTGCMDLKIIHLENNHLTGQLPSSLVNLPNLRELYVQNNMLSGTIPSDLLSEDLVINYSGNIDLHKKSGKQSHMIVIIGSSAGAAVLLLATIISCLFLRKGKKKYYEQDKLVSRPSQSIGSTMSEGPSNAEAAHCFSFSEIESSTNNFERKIGSGGFGVVYYGRLKDGKEIAVKVLTSNSYQGKREFSNEVTLLSRIHHRNLVQLLGYCREEGNSMLIYEYMHNGTLKEHLYGKPR* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1172 695 ProSiteProfiles Protein kinase domain profile. 605 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g1172 695 ProSitePatterns Protein kinases ATP-binding region signature. 611 633 IPR017441 GO:0005524
Amo12g1172 695 Gene3D Phosphorylase Kinase; domain 1 580 680 - -
Amo12g1172 695 PANTHER TYROSINE KINASE DOMAIN PROTEIN 17 692 - -
Amo12g1172 695 SUPERFAMILY L domain-like 405 508 - -
Amo12g1172 695 Pfam Protein tyrosine and serine/threonine kinase 607 691 IPR001245 GO:0004672|GO:0006468
Amo12g1172 695 PANTHER OS07G0107800 PROTEIN-RELATED 17 692 - -
Amo12g1172 695 Gene3D Ribonuclease Inhibitor 380 529 IPR032675 -
Amo12g1172 695 SUPERFAMILY Protein kinase-like (PK-like) 583 694 IPR011009 -
Amo12g1172 695 Pfam Malectin-like domain 36 366 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1172 Amo-Chr12 36611256 36616101 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1172 23 692 Receptor kinase-like Gene Family AT2G37050 68.685 0.0 979
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Amo12g1172 Malectin_like 5.4e-78 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1172 - - gmx:100798007 1176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g1115 06 17498120 17505151 Amo12g1172 12 36611256 36616101 PCT
Amo12g1172 12 36611256 36616101 Amo06g1115 06 17498120 17505151 PCT