Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1171 ATGCTCAATTATGCCCAATTTAATTTAGGTCCATTAACACATGGACGAAGCATCAATTGGATCAAGCGCCTTGAGATTGCAGAAGATGCCGCAAAAGGAATAGAATATCTTCATACAGGATGTGTTCCTGCAGTCATACATAGAGACCTAAAAACCAGCAATATTCTTCTTGACAAGCAAATGCGAGCCAAGGTTTCAGATTTCGGCCTTTCAAAACTTGCTGTTGATGGAGCTTCCCATGTCTCTAGCATAGTCCGGGGGACAGTAGGATATCTTGATCCTGAGTACTATATTTCTCAGCAGTTGACTGACAAGAGTGATATTTATAGTTTTGGAGTTATTCTTCTTGAACTCATATCTGGTCAAGAAGCAATATCGAATGACAGCTTTGGCGCCAATTGCCGAAACATAGTCCAGTGGGCAAAATTACATATTGAGAGTGGAGACATACAAGGTATCATTGATCCAGTGCTAAGAAACAATTATGATCTACAATCAATGTGGAAAATAGCAGAGAAAGCATTGATGTGCGTCCAACCTCACGGCCATATGCGGCCGCCAATATCAGAAGTCCTCAAGGAGATCCAAGATGCGATCGCCATCGAGAGAGAGGTTGGAGGCAATTCAGACGAGTTATCAAGAAATTCTCTACTTTCGTCCAAGAACATTATTGGTTCTATGGATCTGGCCGGAACTGAGAACTTTGTGTCCATTGATGAATCCATGGCACAGCCTACTGCAAGATAG 747 0.4217 MLNYAQFNLGPLTHGRSINWIKRLEIAEDAAKGIEYLHTGCVPAVIHRDLKTSNILLDKQMRAKVSDFGLSKLAVDGASHVSSIVRGTVGYLDPEYYISQQLTDKSDIYSFGVILLELISGQEAISNDSFGANCRNIVQWAKLHIESGDIQGIIDPVLRNNYDLQSMWKIAEKALMCVQPHGHMRPPISEVLKEIQDAIAIEREVGGNSDELSRNSLLSSKNIIGSMDLAGTENFVSIDESMAQPTAR* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1171 248 Pfam Protein kinase domain 25 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g1171 248 PANTHER OS07G0107800 PROTEIN-RELATED 11 246 - -
Amo12g1171 248 ProSitePatterns Serine/Threonine protein kinases active-site signature. 45 57 IPR008271 GO:0004672|GO:0006468
Amo12g1171 248 SMART serkin_6 2 199 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g1171 248 PANTHER TYROSINE KINASE DOMAIN PROTEIN 11 246 - -
Amo12g1171 248 ProSiteProfiles Protein kinase domain profile. 1 199 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g1171 248 Gene3D Transferase(Phosphotransferase) domain 1 8 214 - -
Amo12g1171 248 SUPERFAMILY Protein kinase-like (PK-like) 8 193 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1171 Amo-Chr12 36609791 36611229 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1171 8 212 Receptor kinase-like Gene Family AT1G67720 56.938 1.33e-75 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Amo12g1171 Pkinase 1e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1171 - - gmx:100798007 429.098