Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1170 ATGTGCCGCGGCGGGCGCATGTTTGCCCCTACCAAGATCTGGCGCCGCTGGCACCGCAAGATCAACGTCAACCAGAAGCGGTACGCCGTCGTTTCCGCCATCGCTGCCTCTGCCATTCCCTCACTAGTCGTCGCACGCGGCCACCGCATTGACACCGTGCCGGAGCTCCCTCTCGTCGTCTCAGATGCCGCGGAAGCCGTTGAAAAGACAAAGGAAGCGATCAACGTCTTGAAATCCATCGGAGCTTATTCCGACGCTGAGAAGGCAAAGGACAGCCACGCAATTCGCCCTGGGAAGGGGAAAATGCGTAACCGCCGATACATTTCAAGAAAGGGACCTCTGATTGTGTACGGAACCGAAGGAGCTAAGGCTGTTAAGGCGTTCCGGAACATTCCTGGCGTCGAAGTTGTGAACGTTGAGAGACTGAATTTATTGAAATTGGCGCCTGGTGGACACCTTGGCAGGTTTGTGATATGGACTAAGTCGGCATTCGAGAAGCTTGATTCGATTTATGGTTCGTTTGAGAAGCCGTCTGAGAAGAAGAAGGGGTACTTGCTTCCTAGGGCGAAGATGGTGAATGCAGATTTGGCTAGGATTATTAACTCTGATGAGGTGCAGAGTGTTGTAAGGCCGATCAAGAAGGAGGTTAAGAGGGCTACATTGAAGAAGAACCCTCTGAAGAACCTGAATGTCATGTTGAGGTTGAACCCTTATGCTAAGGCTGCTAAGAGGATGGCACTTCTTGCAGAGGCGCAACGCGTTAAGGCCAAGAAGGAGAAGCTTGACCAGAAGAGGAAGACTGTTTCCAAGGAGGAAGCTTCTGCCATCAGGGCCGCTGGAAAGGCATGGTATCAAACTATGGTTTCAGATTCTGATTACACTGAGTTTGATAACTTCTCTAAGTGGTTGGGTGTTTCACAGTGA 924 0.513 MCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSLVVARGHRIDTVPELPLVVSDAAEAVEKTKEAINVLKSIGAYSDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEVVNVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYLLPRAKMVNADLARIINSDEVQSVVRPIKKEVKRATLKKNPLKNLNVMLRLNPYAKAAKRMALLAEAQRVKAKKEKLDQKRKTVSKEEASAIRAAGKAWYQTMVSDSDYTEFDNFSKWLGVSQ* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1170 307 PANTHER BNAC03G35890D PROTEIN 2 307 - -
Amo12g1170 307 Gene3D - 1 210 IPR023574 GO:0003735|GO:0005840|GO:0006412
Amo12g1170 307 SUPERFAMILY Ribosomal protein L4 1 169 IPR023574 GO:0003735|GO:0005840|GO:0006412
Amo12g1170 307 Pfam 60S ribosomal protein L4 C-terminal domain 182 254 IPR025755 -
Amo12g1170 307 PANTHER 60S RIBOSOMAL PROTEIN L4 2 307 IPR045240 -
Amo12g1170 307 Pfam Ribosomal protein L4/L1 family 1 168 IPR002136 GO:0003735|GO:0005840|GO:0006412
Amo12g1170 307 Coils Coil 244 271 - -
Amo12g1170 307 ProSitePatterns Ribosomal protein L1e signature. 22 48 IPR013000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1170 Amo-Chr12 36585336 36587890 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1170 1 307 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 83.713 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1170 K02930 - gmx:100786828 548.51