Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1166 ATGAACTCCAACAACACCACCTCCAATACTCAGTCAATGGTGACACCAACGCCAACTGCCACAACCGCCACCACCACCACTGCCACCGCCACTGATGCCTCTGCCAAGAAGGTCAGAAAGCCTTACACCATTACCAAGTCCAGAGAGAGCTGGACTGACGAAGAGCACGACAAGTTTCTAGAAGCTCTTCAGCTATTTGACAGAGATTGGAAGAAAATTGAAGATTTTGTAGGATCCAAAACAGTTATTCAGATCCGAAGCCATGCCCAAAAATACTTTTTGAAAGTTCAAAAGAATGGAACAGTAGCACATGTGCCTCCTCCTCGCCCTAAGCGCAAAGCCGCACATCCCTACCCACAAAAGGCATCAAAAAATGTTTTGATGGCACTGCCAGCATCCATTGCTTATGCTCCTTCGACAAATGGCCTTGCACCTGGGTATGCCACATGGGATGAAGCTTCTCTGTTGGTGAACACCGGATCAAATAAATCATTGACCTGTCAAGATGAACTCAGCAATCTTCATGGAAACGAAGCTGATATTGGATCGAAGGGGATAACACAGATTAGTAACAGCAATCTTAATGGTGTCGGGAACTCAACTAGAAAGCTATTGTCTTCTGAGATACCAAAGCAAGGGAAACCAGCGCCAGTTATTCATGGTTTGCCAGATTTTGCCGAAGTTTACAGCTTCATTGGAAGTGTTTTTGATCCTGATACAAATAACCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGAATTTGAGCCGATGAAGAATGTATTATTGTCAACATATGATATCAATGCCATGACAGTAGGAGTTACAGCAGGAATTGATGTCAAGAAGCAACCGAATGACCTATCATGTCAAACTGTTTAA 939 0.4324 MNSNNTTSNTQSMVTPTPTATTATTTTATATDASAKKVRKPYTITKSRESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLMALPASIAYAPSTNGLAPGYATWDEASLLVNTGSNKSLTCQDELSNLHGNEADIGSKGITQISNSNLNGVGNSTRKLLSSEIPKQGKPAPVIHGLPDFAEVYSFIGSVFDPDTNNHVQKLKEMDPINFETVLLLMRNLTVNLSSPEFEPMKNVLLSTYDINAMTVGVTAGIDVKKQPNDLSCQTV* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1166 312 Gene3D - 51 98 - -
Amo12g1166 312 MobiDBLite consensus disorder prediction 1 37 - -
Amo12g1166 312 MobiDBLite consensus disorder prediction 1 33 - -
Amo12g1166 312 PANTHER SWI/SNF COMPLEX-RELATED 19 305 - -
Amo12g1166 312 PANTHER PROTEIN REVEILLE 8 19 305 - -
Amo12g1166 312 SMART sant 47 95 IPR001005 -
Amo12g1166 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 97 IPR017930 -
Amo12g1166 312 ProSiteProfiles SANT domain profile. 46 99 IPR017884 -
Amo12g1166 312 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Amo12g1166 312 ProSiteProfiles Myb-like domain profile. 43 93 IPR001005 -
Amo12g1166 312 CDD SANT 50 93 IPR001005 -
Amo12g1166 312 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 46 95 IPR006447 GO:0003677
Amo12g1166 312 Pfam Myb-like DNA-binding domain 48 93 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1166 Amo-Chr12 36495642 36500483 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo12g1166 Myb_DNA-binding 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1166 - - adu:107474168 561.992