Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1158 ATGCCAACAACTAAGCTCTTCTTCTCCCCACTCCGTCTTCTCCATCTCCCTTCTTCTTCTTCTTCTTCTCTCACAATGAAGCCACCATCTTCATTATTCCTCTCTCGTCCTTCTAGAACTTTCTTCCCTACCTTCCCTTTCAAATTCAAGTACCTCGCCCTCCGAAACGCACCGTTTCGCGCCCTTTCCACTCGCTCCGACTCCACGCGCCGCAAAGAAAGGCCTCGCCTTTCTTCTCCCTCCGCCACCCCAAAGAGCTTAATTGACGACGAGGCTGAGCTCAGTGACTGGGTCGACGAGATTAGAACCGCGCGAGTTGACTCGGACTTTGGCGAGTCAACTCGGAATCGCAGGCAAGTTCGCCGTGACACTAATTCGAACTCGTCGTTCTCGCGGAATTCGGGGTTTTCGCAGCGCAGATTCGGTCGCGAATTGGAGAAGGAAGACAATGGCGGATTCAGGACAAGGAAGAGAAGGGGTGTGGAATTGAACAGAGGAAGTGGAGGGAAGAGTTTGAGCAGAAAACCTAAACCCCAATTGATGAGCGATGATGAAGATGATGAAGTGGTTGTGAGAAAGGGATTCAAGGGTTTTCTGAGTGAGGAAGAGGAAGAAGAAGAAGAAGAAAGTGGTGAGAGTGAGGATGATGAGATTGTGAGAAAGAGTAGAACTGCTTTGTTTGGTGGCACTAAACAACAACAACCAGCACCAGCAGCTCCAAGAGCTTCTTCACCTTCTGGAACTGATTCTTATTTGAGTGACACCAGGTTCGATCAATGTTCAATCTCCCCACTATCATTAAAAGGAGTCAAGGATGCTGGATATGAGAAGATGACTATTGTACAGGCGGCAACTCTTCCTGTAATACTCAAAGGTAAGGATGTCCTTGCCAAGGCTAGAACAGGCACTGGGAAAACAGTTGCCTTTTTGCTTCCATCAATTGAAGTTGTTGCAAATTCACCACCAACTGAACGTGATCATAGGCGGCCACCAATTCATGTGCTTGTCATATGTCCAACTCGAGAGCTTGCAAGTCAAGCGGCTACAGAAGCTGCTAAATTGCTTAAGTATCATCCTACCATTGGTGTTCAGGTTGTAATTGGAGGGACGAGACTTGCCTTAGAACAGAAACGTATGCAAGCAAATCCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTAGAGATCATGTGGAGAATACTGCTGGCTTTGCAACTCGGCTGATGGGTGTGAAAGTGTTGGTGCTYGATGAAGCTGATCATTTACTGGACATGGGATTTCGGAAAGACATTGAGAAGATAATTGCAGCAGTACCTAAACAACGACAAACACTCATGTTTTCTGCCACTATTCCGGATGAGGTGCGTCAAGTCTGTCATATTGCTTTGAGAAGGGATCATGAGTTTATCAATACGGTTCAAGAGGGAACTGAGGAGACGCACTCACAGGTTCGCCAAGCACATTTAGTTGCCCCATTAGACAAGCATTTCTCTTTACTCTATGCTCTTCTAAAGGAGCACATTGCGGATGATGTTGACTATAAGGTTCTTGTGTTCTGCACAACCGCCATGGTGACAAGACTTGTTGCCGAACTTCTTGGCGAGTTGAACCTGAATGTCAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTCTCTGAAGAATTTCGCAAGTCAAAGGGACTTATCTTGGTTACATCCGATGTGTCTGCACGTGGAGTTGATTATCCAGATGTCACTCTTGTTGTACAGGTTGGTTTACCCACTGACAGAGAACAGTATATACATAGACTTGGTAGAACGGGACGTCGAGGGAAGGAAGGGCAGGGCATATTGCTTTTGGCTCCATGGGAAGAGTTCTTCTTATCTACCGTAAAAGATTTGCCTATTGAGAAAGCTCCCATTCCTTCTGTTGATCCTGACACAAAGAAAAAGGTGGAAAGGGCTCTATGCCATGTTGAGATGAAGAACAAAGAAGCAGCATATCAAGCATGGCTTGGTTACTACAATTCGAACAAGAAGATCGGGCGCGACAAGTATAGGCTCGTAGAGCTTGCAAATGAGTTCAGCAAATGCATGATGCTTGATAACCCTCCTGCTATCCCTAAGCTTGTTCTTGGCAAGATGGGACTTAGAAATATCCCTGGTTTGCGTTCCAAATAG 2172 0.4622 MPTTKLFFSPLRLLHLPSSSSSSLTMKPPSSLFLSRPSRTFFPTFPFKFKYLALRNAPFRALSTRSDSTRRKERPRLSSPSATPKSLIDDEAELSDWVDEIRTARVDSDFGESTRNRRQVRRDTNSNSSFSRNSGFSQRRFGRELEKEDNGGFRTRKRRGVELNRGSGGKSLSRKPKPQLMSDDEDDEVVVRKGFKGFLSEEEEEEEEESGESEDDEIVRKSRTALFGGTKQQQPAPAAPRASSPSGTDSYLSDTRFDQCSISPLSLKGVKDAGYEKMTIVQAATLPVILKGKDVLAKARTGTGKTVAFLLPSIEVVANSPPTERDHRRPPIHVLVICPTRELASQAATEAAKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHVENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATIPDEVRQVCHIALRRDHEFINTVQEGTEETHSQVRQAHLVAPLDKHFSLLYALLKEHIADDVDYKVLVFCTTAMVTRLVAELLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVVQVGLPTDREQYIHRLGRTGRRGKEGQGILLLAPWEEFFLSTVKDLPIEKAPIPSVDPDTKKKVERALCHVEMKNKEAAYQAWLGYYNSNKKIGRDKYRLVELANEFSKCMMLDNPPAIPKLVLGKMGLRNIPGLRSK* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1158 723 MobiDBLite consensus disorder prediction 64 85 - -
Amo12g1158 723 MobiDBLite consensus disorder prediction 139 164 - -
Amo12g1158 723 Pfam Helicase conserved C-terminal domain 499 608 IPR001650 -
Amo12g1158 723 MobiDBLite consensus disorder prediction 226 255 - -
Amo12g1158 723 MobiDBLite consensus disorder prediction 110 255 - -
Amo12g1158 723 Gene3D - 200 470 IPR027417 -
Amo12g1158 723 Gene3D - 478 701 IPR027417 -
Amo12g1158 723 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 624 IPR027417 -
Amo12g1158 723 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 503 650 IPR001650 -
Amo12g1158 723 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 286 469 IPR014001 -
Amo12g1158 723 PANTHER RNA HELICASE 44 123 - -
Amo12g1158 723 PANTHER RNA HELICASE 213 721 - -
Amo12g1158 723 MobiDBLite consensus disorder prediction 177 200 - -
Amo12g1158 723 SMART ultradead3 274 487 IPR014001 -
Amo12g1158 723 CDD DEADc_MSS116 262 471 - -
Amo12g1158 723 Pfam DEAD/DEAH box helicase 281 457 IPR011545 GO:0003676|GO:0005524
Amo12g1158 723 SMART helicmild6 527 608 IPR001650 -
Amo12g1158 723 MobiDBLite consensus disorder prediction 123 138 - -
Amo12g1158 723 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 255 283 IPR014014 GO:0003724
Amo12g1158 723 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 44 123 - -
Amo12g1158 723 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 213 721 - -
Amo12g1158 723 CDD SF2_C_DEAD 484 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1158 Amo-Chr12 35824366 35829263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1158 248 638 Eukaryotic Initiation Factors Gene Family AT3G19760 29.167 3.45e-47 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1158 - - adu:107463398 1305.81