Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1137 ATGGAAGTACTTCCCTGTTCTGGTGTTCAATGTACAGGGGAATCTGACCGTCCTCAACAGAGTCCAGGGACAGCCTTTTTATATCAGGGAGAACCTAATTACCCTGAAAATGGTCAACAAGTTAAATTTGGAGACRGTCAACTGAATGAATTRTCACACAAAATGGAAGGGTCTCAGATAGAAAAGCAAGGTGAAGAAAAATGGACTGTCTGTCATTTGTCGACTAATTCGGATGTTCAATGCAGCAGAGATTCAGGTTGTGGCTTTCAGGGGGAAGACCAGAAGGAAGACTCCGCTCTCGATGATCTTGATGATGATTTGATAAATGAACCTTGCTTAACMTCTGAAAATTCTCTCTTGGTTGTGGATACGATTGAAAGCGAATCACCAAACAACAGGGAAGGAGATTTATCATTTTCTGAACCCAAGTGGCTAGAGGGGGATGAACCTGTGGCATTATGGGTCAAGTGGAGAGGAAAGTGGCAGACTGGCATCAGATGTGCGAGAGCTGACCGGCCATTATCAACTTTGAGAGCAAAACCAACTCATGGACGGAAGAAATATTTTGTCATATTTTTTCCACACACAAGGAATTATTCTTGGGCAGATATGCTGCTTGTCCGATCAATCGATGAGTTTCCCCATCCTATTGCATATAAGACTCATTGGGTAGGATTAAAAATGGTAAGYGACTTGACTATTGCACGGCGGTTTATAATGCAGAAGCTAGCTATTGGAATGCTGAATATTGTTGATCAGCTTCATCCAAATGCACTGACAGAAACTGCCCGTGATGTGAAGGGCTGGAAGGAATTTGCCATGGGTGCTTCCCATTGTACTGGTTATTCAGAATTTGGAAGAATGCTTCTAAAGCTGCACAATAGCATATTGCAGCCCTACATAAATGCTGATTGGTTACAGCATTCTTCTCACTCTTGGGCTGAAAGATGTCATATTGTGAATAGTGCCGAATCTGTAGAGCTGCTGAAGGAGGAATTGTCTGATTCTATTTTATGGAACGATGTCAACTCTCTTTGGAGGACACCGGCACAACCAATGTTAGGTTCTGACTGGAAATCCTGGAAGCATGATGTAATGAAATGGTTTACAACTTCACCTTCCTTATCTTGCAGCAAAGACACACAGCCACAGACTCCTGATGCTTCGTATGCTGCAAACCTTCAGGTTTCTAGAAAACGGGCCAAACTTGAAGTTCGTCGGGCAGATACACATGCTTCGCAAGCGGAAAGGAAAGATGTGAATCAGTCTGTTGCTCTTGAGACTGACCTTGGGTTCTTTAAGAATCAGGATACATTGAGCCTATTAGCAGCTGAGAATGGTAAACATGAAGATGTTAGGGAGGTATCTGCTGCGAACGATTTAACTAGTAATGTGGCCAATAAATGGAATGAAATTGTAGTTGAGGCTGCCGATTCGGATTGCTTGCATACCAAAGGAATGGAATTAACACCTGTGAGTGAAATGGCTGTTTCAAAATCAGTAGAGCCCGGTAGTAAGAATCGACAATGTATAGCCTATATTGAATCAAAGGGAAGACAGTGTGTGAGATGGGCAAATGATGGTGATGTTTATTGTTGTGTACATTTGTCCTCTCGATTTTTGGGCAGCTCGGAAAAAGCTGAGAAGCTGGTTCCAGTTGATACTCCTATGTGTGAAGGTACTACTGTTCTGGGTACAAAATGCAAGCACCGAGCCCTACCTGGTTTTCTATTCTGTAAGAAACACAAGCCTCATGATGAAACAGAGATCTCACATTCACCACAAAGTACACTGAAAAGGAAACTTGAAGAAAATTATGCTGGTTCAGTGAACACCTGCAGAGACATTGTGTTGGTAAATTCTGAAAGCCCACTGGAAGTGGAGCCAGTGTCATTCATTGGCGATGATTACTTTCAAAGAAAAAGCAGCTTAGGTGAGAATCCCACACATCCTGATAATTATGATGCAACGAAGGGTCTGCACTGTATTGGTTCTCCTCCCTTTGATGACAAGAATCCATGTAGAGAAGCTCCTAAGCGATATTGCTTGTATTGTGAAAATCACCTTCCTAGCTGGCTTAAACGTGCAAGAAATGGGAAGAGTAGAATCGTATCGAAAGAAGTGTTCACAGAACTTTTGAGGGACTGCAACTCGTGGGAGCAAAAGGTGCATTTGCATAAAGCATGTGAGCTTTTCTACAGGCTGTTCAAAAGCATTTTATCACTAAGAAACCCAGTTCCTAAGGATGTTCAATTCCAGTGGGCTTTGACTGAAGCCTCTAAAGATACTAGTGTAGGAGAATTCTTTACAAAGTTGGTTCATACTGAGAAGGCTAGAATCAAACTAATTTGGGGATTCGGTGATGACTTGGATGTATCTCCTATCATGGAAGAACCACCASTTTTGCCATCCACAACCACTGATAGCATCGATAATGAAAATGCCATTAAGTGTAAGATATGCTCTGCAGAATTCAGTGATGACCAAGCTCTTGGTAACCATTGGATGGATAGTCATAAAAAGGAAGCACAGTGGCTGTTTAGGGGTTATGCATGTGCCATTTGTCTGGATTCTTTTACKAACAAGAAACTGTTGGAAACACATGTTCAAGAGCGACACCATGTGCAGTTTGTTGAACAGTGTATGCTTCTACAATGTATTCCTTGTGGTAGTCATTTCGGAAACAGTGAGCAATTATGGCAGCATGTTTTATCAGTTCAYCCTGTTGATTTAAAGCCATCAAAAGCTCCTGAGCGGCAAACTCTCCCTGCTGGAGCTGGTCAAGATTCTCCAGTAAAACATGTCCARGRAAACTCTGCTCCTTTGGAGAATAATTCTGAGAATCCGGGTGTCTTGCGGAAGTTCACTTGCAGGTTTTGTGGGTTGAAATTTGATTTGTTACCTGACCTTGGTCGACATCACCAAGCTGCCCATATGGGACCCAATCTAGTTAGCAACCACCCTGCGAAGAAGGGGGTTCGCTACTATGCATATAGATTAAAATCTGGCAGACTTAGCCGTCCTAAATTTAAAAAAGGTTTGGCAGCAGCATCATATAGGATCAGAAACAGGGCTAATGCTAATCTAAAGAGAGGTATCCAAGCAACAAAATCGCTTGGCATGAGGGACATGTCCTTACAACCTCGTGTAACATCATTACAACCTCAGGTGACAACATCCTTACAGCCTCATGTAACTGAAACATCAAAGATTAGTAAATTCGTGGAACATCAGTGCTCGGGAGTTGCAAAAATTTTATTTTCTGAGATTCAGAAGACTAAACCTCGGCCCAACAATCTTGATATTCTATCAATTGCTCACACTGCTTGCTGCAAAGTTAGTCTTGCAGCCTCACTTGAGGAGAAATTTGGAATTCTACCTAAAAGAATATATTTGAAGGCAGCAAAACTTTGTGCTGAGCATAATATTATTGTAAATTGGCATCATGAGGGGTTTATTTGTCCTAGAGGCTGCAATGGTTTGAAGGATCAAGCATTGCTCTCTCCCTTATCATCTCTTCCTAATAGTTTTGTGAGGCCAAAATCTGTAAATGTATCAGATCATGCAAGTGATGAGTGGGAACTGGATGAATTTCATTGCATCATCAATTCACATGGTCTAAAGTTAGGGTCACTGCAAAAATCTTCAATCTTTTGTGATGATATAAGCTTCGGGAAGGAATCAACTCCTGTGATTTGTGTAGTAGATCAAGAACTTTTGCATTCTATCAATAAGAATGATTCCAATGATCAAGATACTGACTCTGCTATGCCTTGGAAGAGCTTTACCTATGTTACAAAGGCAATGCTTGATCAATCCCTTAGTCTTGATTCGGAGAGTCTGCAATTGGGATGTTCCTGCTCATATTCTTCCTGCTGTCCTGAAACATGTGACCATGTATACCTTTTTGGTAATGACTATGAGGATGCGAACGACATATTTGGGAAACCAATGCGTGGCAGGTTCCCATATGACGAGAATGGTCGAATAATATTAGAGGAAGGTTACCTTGTCTATGAGTGTAACCGAAGATGCAGATGCAATAAGTCCTGTCCAAACAGAATATTACAGAATGGAGTACGAGTCAAGTTGGAAGTCTTTAAAACAGAGAATAAGGGATGGGGGGTAAGGGCTGGGGAGGCTATCCTACGTGGCACATTTGTGTGCGAGTACATTGGAGAGGTTTTAGATGTTCAGGAGGCACATAACAGGCGCAAGAGATATGGCACAGAACATTGCAGTTATTTCTATGACATCGATGATCATGTTAACGATATGAGCAGATTGATAGAAGGACAGGCGCACTATATAATAGATGCTACTAAATATGGAAATGTGTCCAGGTTCATCAATCATAGCTGCTCGCCAAATCTTGTGAATCACCAAGTTCTAGTCGAGAGCATGGATTGCGAGCGTGCGCACATCGGTCTTTATGCAAGTCGGGATATTGCTCTGGGTGAAGAGCTGACACATGATTATCATTATAAGCTTGTGTCTGGAGAAGGAACTCCTTGCCTTTGCGGCGCTTCCAAGTGCAGGGGACGCCTTTATTAG 4554 0.4199 MEVLPCSGVQCTGESDRPQQSPGTAFLYQGEPNYPENGQQVKFGDXQLNELSHKMEGSQIEKQGEEKWTVCHLSTNSDVQCSRDSGCGFQGEDQKEDSALDDLDDDLINEPCLTSENSLLVVDTIESESPNNREGDLSFSEPKWLEGDEPVALWVKWRGKWQTGIRCARADRPLSTLRAKPTHGRKKYFVIFFPHTRNYSWADMLLVRSIDEFPHPIAYKTHWVGLKMVSDLTIARRFIMQKLAIGMLNIVDQLHPNALTETARDVKGWKEFAMGASHCTGYSEFGRMLLKLHNSILQPYINADWLQHSSHSWAERCHIVNSAESVELLKEELSDSILWNDVNSLWRTPAQPMLGSDWKSWKHDVMKWFTTSPSLSCSKDTQPQTPDASYAANLQVSRKRAKLEVRRADTHASQAERKDVNQSVALETDLGFFKNQDTLSLLAAENGKHEDVREVSAANDLTSNVANKWNEIVVEAADSDCLHTKGMELTPVSEMAVSKSVEPGSKNRQCIAYIESKGRQCVRWANDGDVYCCVHLSSRFLGSSEKAEKLVPVDTPMCEGTTVLGTKCKHRALPGFLFCKKHKPHDETEISHSPQSTLKRKLEENYAGSVNTCRDIVLVNSESPLEVEPVSFIGDDYFQRKSSLGENPTHPDNYDATKGLHCIGSPPFDDKNPCREAPKRYCLYCENHLPSWLKRARNGKSRIVSKEVFTELLRDCNSWEQKVHLHKACELFYRLFKSILSLRNPVPKDVQFQWALTEASKDTSVGEFFTKLVHTEKARIKLIWGFGDDLDVSPIMEEPPXLPSTTTDSIDNENAIKCKICSAEFSDDQALGNHWMDSHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCMLLQCIPCGSHFGNSEQLWQHVLSVHPVDLKPSKAPERQTLPAGAGQDSPVKHVQXNSAPLENNSENPGVLRKFTCRFCGLKFDLLPDLGRHHQAAHMGPNLVSNHPAKKGVRYYAYRLKSGRLSRPKFKKGLAAASYRIRNRANANLKRGIQATKSLGMRDMSLQPRVTSLQPQVTTSLQPHVTETSKISKFVEHQCSGVAKILFSEIQKTKPRPNNLDILSIAHTACCKVSLAASLEEKFGILPKRIYLKAAKLCAEHNIIVNWHHEGFICPRGCNGLKDQALLSPLSSLPNSFVRPKSVNVSDHASDEWELDEFHCIINSHGLKLGSLQKSSIFCDDISFGKESTPVICVVDQELLHSINKNDSNDQDTDSAMPWKSFTYVTKAMLDQSLSLDSESLQLGCSCSYSSCCPETCDHVYLFGNDYEDANDIFGKPMRGRFPYDENGRIILEEGYLVYECNRRCRCNKSCPNRILQNGVRVKLEVFKTENKGWGVRAGEAILRGTFVCEYIGEVLDVQEAHNRRKRYGTEHCSYFYDIDDHVNDMSRLIEGQAHYIIDATKYGNVSRFINHSCSPNLVNHQVLVESMDCERAHIGLYASRDIALGEELTHDYHYKLVSGEGTPCLCGASKCRGRLY* 1518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1137 1517 ProSiteProfiles Pre-SET domain profile. 1283 1359 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo12g1137 1517 Gene3D SET domain 1211 1517 IPR046341 -
Amo12g1137 1517 Pfam SET domain 1373 1493 IPR001214 GO:0005515
Amo12g1137 1517 MobiDBLite consensus disorder prediction 911 947 - -
Amo12g1137 1517 SMART set_7 1362 1500 IPR001214 GO:0005515
Amo12g1137 1517 MobiDBLite consensus disorder prediction 1 41 - -
Amo12g1137 1517 ProSitePatterns Zinc finger C2H2 type domain signature. 886 907 IPR013087 -
Amo12g1137 1517 ProSitePatterns Zinc finger C2H2 type domain signature. 818 839 IPR013087 -
Amo12g1137 1517 ProSiteProfiles Post-SET domain profile. 1501 1517 IPR003616 -
Amo12g1137 1517 Pfam Pre-SET motif 1223 1354 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo12g1137 1517 SUPERFAMILY SET domain 1213 1507 IPR046341 -
Amo12g1137 1517 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1517 - -
Amo12g1137 1517 ProSiteProfiles Zinc finger C2H2 type domain profile. 850 873 IPR013087 -
Amo12g1137 1517 MobiDBLite consensus disorder prediction 932 947 - -
Amo12g1137 1517 MobiDBLite consensus disorder prediction 12 41 - -
Amo12g1137 1517 Coils Coil 398 418 - -
Amo12g1137 1517 Pfam Zinc finger C2H2-type, 3 repeats 852 979 IPR040689 -
Amo12g1137 1517 SMART preset_2 1219 1346 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo12g1137 1517 Gene3D Classic Zinc Finger 802 876 - -
Amo12g1137 1517 ProSitePatterns Zinc finger C2H2 type domain signature. 957 978 IPR013087 -
Amo12g1137 1517 ProSiteProfiles SET domain profile. 1362 1494 IPR001214 GO:0005515
Amo12g1137 1517 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1517 - -
Amo12g1137 1517 SMART c2h2final6 850 873 IPR013087 -
Amo12g1137 1517 SMART c2h2final6 816 839 IPR013087 -
Amo12g1137 1517 SMART c2h2final6 884 907 IPR013087 -
Amo12g1137 1517 SMART c2h2final6 955 978 IPR013087 -
Amo12g1137 1517 SMART PostSET_3 1501 1517 IPR003616 -
Amo12g1137 1517 ProSiteProfiles Zinc finger C2H2 type domain profile. 816 844 IPR013087 -
Amo12g1137 1517 ProSiteProfiles Zinc finger C2H2 type domain profile. 955 983 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1137 Amo-Chr12 33509541 33520213 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1137 124 1516 C2H2 Transcription Factor Family AT2G23740 51.135 0.0 1372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo12g1137 Pre-SET 4.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1137 - - adu:107487826 3086.98