Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1104 GTAGAGGAAGGTGAAGAGGATGATGAAATTAAGGATCTTTTCAAGGTAGGTAAGAAAAAGAAGAAGAATGAGAGAAGTCCTGTAGAAATAGCTTTATTAGTTGAGAACGTCATGGCTGAGCTTGAGGTCACAGCTGAAGAGGATGCTGAACTTAATAGACAGGGGAAGCCTGCCATTAATAAACTAAAGAAGTTGGATCTTCTAACAGAAGAAATAGCTCTAACATTTTTGGACCATGGAGTACTAACTTTGTTAAAGAATTGGCTTGAGCCACTTCCTGATGGAAGCTTGCCAAATATTAACATACGCACAGCAATTTTGACTATTTTAAATGTTTTTCCTATTGACCTAGAGCAGTATGATAGAAGAGAACAGCTGAAGAAGAGTGGTCTTGGGAAGGTGATCATGTTCCTATCGAAGTCCGACGAAGAAATCAATGTAAATAGAAAACTAGCTAAGAAACTGGTTGACAAATGGAGCCGACCCATATTTAATAAGAGTACACGGTTTAAGGACATGAGAAATGCTGAGGACGATAGGATTCCTTTCAGGAGGCCAACTGTTAATAAGTGCTCAACCATTCTGATTTAA 591 0.3858 VEEGEEDDEIKDLFKVGKKKKKNERSPVEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLDLLTEEIALTFLDHGVLTLLKNWLEPLPDGSLPNINIRTAILTILNVFPIDLEQYDRREQLKKSGLGKVIMFLSKSDEEINVNRKLAKKLVDKWSRPIFNKSTRFKDMRNAEDDRIPFRRPTVNKCSTILI* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1104 196 ProSiteProfiles TFIIS N-terminal domain profile. 83 166 IPR017923 -
Amo12g1104 196 PANTHER PROTEIN IWS1 HOMOLOG 1 2 191 IPR044204 GO:0009742|GO:0032784
Amo12g1104 196 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 27 169 IPR035441 -
Amo12g1104 196 Coils Coil 34 54 - -
Amo12g1104 196 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 76 168 IPR035441 -
Amo12g1104 196 Pfam TFIIS helical bundle-like domain 117 163 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1104 Amo-Chr12 30528761 30529955 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Amo12g1104 Med26 1.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1104 K17498 - gmx:100801805 321.242