Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1090 ATGACATTCCCCTCTGTGAAAGATTATGAAACTTTTTATACCAATTATGCAAAGAGGGTTGGTTTTTCATGGAATATAAGAACTACTAAGTGGAATCAAAATAGACAGATTACATATCAAATCTTAGTATGTTCTAAAGCTGGTTATCAAAGATCAAAAATTGATCCACTAAAGAAGACAAATCTAACTTCCGAGCAAAATTGTAAAGTTAGGATTATTGTGAAAAAGGACAAGAAGCTGGAATATGTGTTAACCTTTGTGAATAACCAGCACAATCATGTTATTAGTCCTAGCATGGCAAACACTCTGAGAAAGAATAGGGAACTAAGCTTGCATGCCAAATGGATAGCTGAGATCAATGATCAAGCTGGTGTTACAATGAGAAACAGATATCAGAGTTTAGCAACTACTGCTGGTGGCTATGATAAATTGACTTTTAATGAGAAAGATCTTCGGAATCATGTAGCAAAAAGTTTGTACGAAGAACGTGACAAGTGGGTCCTAATTTTTCTTAGTAATAGTTTTTGGGTAGGCATGAGTAGCACTCAAAGGAGTGAAAGCATGCATTCATTTATGAAGGGCTACCTAACCTCAAAGAGCAACTTGCAACAATTTGTAACACAACATGACAACTGTCTTGTAAATAAAGCTCAAAAAGAATATGAATTGGATGCTGCCAGCTTCAATACTATTATCCCTTGTGCTACTGCCTCTGCTATTGAAAAACTATTTCAAAAGGAATATTCTCATGCAAAGTTTAATGAGCTTCAAAAGGAGTTTAGAGCAAAGGCTAATTGCTTTTCAACAAAAGAGCATGAACAGGGATATATTGTTACTTACAAGGTTATAGAAGAGATTGAGAATGGTGATAAGATGTTTGATTCTATGTATGAGGTGTTGTTTGATTCTTCAACTTCAGATGTTTCTTGCCAATGCCATCTTTTTGAGTCAAAGGGAATCTTATGCTGCCATACTCTTTCAGTCCTTGGTCTTGTAAGAGTGAAGAAATTGCCAAATAAGTACATTCTTGATCGGTGGAAGAAAACTTTAAAGCACAAGCACATAGCATCAAGTGTAGCCATGATCCAAGCCGTTTAG 1098 0.3561 MTFPSVKDYETFYTNYAKRVGFSWNIRTTKWNQNRQITYQILVCSKAGYQRSKIDPLKKTNLTSEQNCKVRIIVKKDKKLEYVLTFVNNQHNHVISPSMANTLRKNRELSLHAKWIAEINDQAGVTMRNRYQSLATTAGGYDKLTFNEKDLRNHVAKSLYEERDKWVLIFLSNSFWVGMSSTQRSESMHSFMKGYLTSKSNLQQFVTQHDNCLVNKAQKEYELDAASFNTIIPCATASAIEKLFQKEYSHAKFNELQKEFRAKANCFSTKEHEQGYIVTYKVIEEIENGDKMFDSMYEVLFDSSTSDVSCQCHLFESKGILCCHTLSVLGLVRVKKLPNKYILDRWKKTLKHKHIASSVAMIQAV* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1090 365 SMART 26again6 308 335 IPR006564 GO:0008270
Amo12g1090 365 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 151 357 IPR031052 GO:0006355
Amo12g1090 365 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 132 IPR031052 GO:0006355
Amo12g1090 365 PANTHER OS03G0843700 PROTEIN 151 357 - -
Amo12g1090 365 PANTHER OS03G0843700 PROTEIN 1 132 - -
Amo12g1090 365 Pfam FAR1 DNA-binding domain 11 95 IPR004330 -
Amo12g1090 365 ProSiteProfiles Zinc finger SWIM-type profile. 297 333 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1090 Amo-Chr12 29606039 29608215 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo12g1090 FAR1 9.4e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1090 - - aip:107627133 424.861