Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1055 ATGACAGTTATCAAGAGAGAAAGAGAAACAAACAATGGAAAAGAGAGCATAGATTATTTGGCAAATACCCTAATGTTGCTCTCAAGTGCCATAGAATTGAAGAGTAGTGAGAAATTCGAGTGCAAGACATGTGGCCGCAAGTTCGCATCTTTTCAAGCACTTGGTGGGCACAGAACCAGTCACAAGAGACAAAAGCATAATGGTGATCATGGTGATGAGCAACAACTCAAATCAGAGGCCAAGAAACCCAAGAAGATGCACGAGTGTTCAATCTGTGGAATGGGATTCTCTTTGGGGCAGCAATTAGGTGGCCACATGAGAAAGCACAGAGAGAATAATAATAAAGGGTTTTCTTCTAATCCTATAAACCATGCTGTTGTCAAAGTTCCGGTTTTGAAGAGATCAAATAGCAAGAGGGTTATGTGTATGGACTTGAACTTGACGCCATTGGAGAATGATCTCAAGTTGTTGTTTGGAAACAAGGCACCACGAGTTGATCTTTCTTTCTTGTGA 513 0.4113 MTVIKRERETNNGKESIDYLANTLMLLSSAIELKSSEKFECKTCGRKFASFQALGGHRTSHKRQKHNGDHGDEQQLKSEAKKPKKMHECSICGMGFSLGQQLGGHMRKHRENNNKGFSSNPINHAVVKVPVLKRSNSKRVMCMDLNLTPLENDLKLLFGNKAPRVDLSFL* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1055 170 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Amo12g1055 170 MobiDBLite consensus disorder prediction 54 81 - -
Amo12g1055 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Amo12g1055 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Amo12g1055 170 MobiDBLite consensus disorder prediction 65 81 - -
Amo12g1055 170 SUPERFAMILY beta-beta-alpha zinc fingers 38 109 IPR036236 -
Amo12g1055 170 Gene3D Classic Zinc Finger 36 109 - -
Amo12g1055 170 SMART c2h2final6 87 109 IPR013087 -
Amo12g1055 170 SMART c2h2final6 39 61 IPR013087 -
Amo12g1055 170 Pfam C2H2-type zinc finger 87 111 - -
Amo12g1055 170 Pfam C2H2-type zinc finger 39 64 - -
Amo12g1055 170 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Amo12g1055 170 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 4 164 - -
Amo12g1055 170 PANTHER ZINC FINGER PROTEIN ZAT5 4 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1055 Amo-Chr12 27962287 27963218 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1055 4 170 C2H2 Transcription Factor Family AT2G37430 41.989 1.59e-39 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo12g1055 zf-C2H2_6 5.2e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1055 - - gmx:100526874 202.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1654 16 32097885 32098591 Amo12g1055 12 27962287 27963218 PCT
Amo06g1012 06 14099578 14100273 Amo12g1055 12 27962287 27963218 PCT
Amo12g1055 12 27962287 27963218 Amo16g1654 16 32097885 32098591 PCT
Amo12g1055 12 27962287 27963218 Amo06g1012 06 14099578 14100273 PCT