Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1051 ATGAAAAGACAACGAGATCATCAAGTAATAATGGATAGTAATAGCATTGACTTGGCACAATGTCTAATGCTACTTTCTCATCAAAACCCTAAAGATCAAAGCAAAGTCCACCATTATCATCGTCACCAGAAACATTTTCACCCAACGGAATTTGAGTGTAGCATATGCAACCGCAAATTCTCTTCATTTCAAGCCCTTGGTGGTCACAAAGCTAGCCACAAGAAACAAAAGATGGAGAAGAATAACAAAGAAGAAGCCACAACTACTCTCAGCTTAGGAGTAGGGAACAATAATAATGTTTTTGTTAACAAACCCAATAAAATGCATGAGTGTTCAATTTGTGGTCAAAGATTCTCTCAAGGGCAAGCACTTGGAGGGCACATGAGAAAGCATAGACTACTTGCCAATCAAGAAACGTTTCTAATTCCTTCTATAAACGACGTCGTCCTGGGAAAAATCCCACCAGTTCTAAAGAGATCTAATAGCTTCAGGGTTATGAGTTTGGATTTGAACCTAACACCTCTGCAGAATGATTTGAACGTATTGTTTGGAAACATGGCACCAAAAGTTGATCCAAGCTGGGTTTGA 588 0.3895 MKRQRDHQVIMDSNSIDLAQCLMLLSHQNPKDQSKVHHYHRHQKHFHPTEFECSICNRKFSSFQALGGHKASHKKQKMEKNNKEEATTTLSLGVGNNNNVFVNKPNKMHECSICGQRFSQGQALGGHMRKHRLLANQETFLIPSINDVVLGKIPPVLKRSNSFRVMSLDLNLTPLQNDLNVLFGNMAPKVDPSWV* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1051 195 Gene3D Classic Zinc Finger 94 139 - -
Amo12g1051 195 SMART c2h2final6 109 131 IPR013087 -
Amo12g1051 195 SMART c2h2final6 51 73 IPR013087 -
Amo12g1051 195 PANTHER ZINC FINGER PROTEIN ZAT5 1 192 - -
Amo12g1051 195 ProSitePatterns Zinc finger C2H2 type domain signature. 111 131 IPR013087 -
Amo12g1051 195 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 78 IPR013087 -
Amo12g1051 195 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 1 192 - -
Amo12g1051 195 SUPERFAMILY beta-beta-alpha zinc fingers 51 131 IPR036236 -
Amo12g1051 195 Pfam C2H2-type zinc finger 51 76 - -
Amo12g1051 195 Pfam C2H2-type zinc finger 109 132 - -
Amo12g1051 195 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Amo12g1051 195 Gene3D Classic Zinc Finger 49 71 - -
Amo12g1051 195 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 131 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1051 Amo-Chr12 27923772 27924511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1051 1 195 C2H2 Transcription Factor Family AT2G37430 43.216 7.23e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo12g1051 zf-C2H2_6 2.2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1051 - - aip:107627118 378.252