Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0999 ATGAAGAAACAGGAAGAACAGTGTAACAGAGAATCTAAGAAGAAGGGTCACATTGTAACTTGGACTCAAGAGGAAGATGATATACTGAGAGAGCAGATTGGTATCCATGGAACTGAAAAATGGTACACTTACTTGAATTCTGATTTCAAGAAAGGTGGATGGTCACCAGAGGAAGACATGCTTTTGTGTGAGGCTCAAAAATTATATGGCAACAGATGGACAGAAATAGCGAAAGTGGTTTCAGGAAGGCAAATGGATCTGTATGAAGACTCTCCAGCCAGTTCTGAATACAGTACAGGATCAACTATCCTCCCTCTCTCAGCTGGTGACATTATGGAACACTCTTCACACCGGGATATAGAAACTGAAATGAAAACCACACAAATTGAAGATAAGAAAGAAGCAGATGGATGTGAGAGAGGTGTTCTAGTTACTGCAACCCTGGATCAAGATATGCTGCTGAATTCGGAAGAACAAATAAACAATGATAGCGCTGTTTCTGCCTCATCAAGAGTGGAGTTTGGTTCCCCTGTTCAAGTAACTCCGATATTCAGATCTTTGGCTGCAGGGATTCCCAGCCCAGAATTTTCGGAAAGTGTCCGTTCCGGTGCAGATGAAGACAGCATCCAAAACATAGGAAAGGAACTTCTTAAGGAAAACACTAGGAGTGGAGTCTCCATCTCTCAACCCAAGTGCTCAACCATCACAACCGCCACCCTGCAAAAGAGCCCTACTAGACAGTTTACAATCCTAGATCTCAATATCCATAGATTCATGCTGCATGCAGATTGCAGAGCTTTCCTTCATGGAGTGCTTGTTGTGCTGTGTGGAACAAGAGTTCATCTTAATGAGTTAGTTCCATGGCTGTTGATGGTGGTTGTGAAGTGGAATCCAGAAGGCATTACATAA 909 0.4279 MKKQEEQCNRESKKKGHIVTWTQEEDDILREQIGIHGTEKWYTYLNSDFKKGGWSPEEDMLLCEAQKLYGNRWTEIAKVVSGRQMDLYEDSPASSEYSTGSTILPLSAGDIMEHSSHRDIETEMKTTQIEDKKEADGCERGVLVTATLDQDMLLNSEEQINNDSAVSASSRVEFGSPVQVTPIFRSLAAGIPSPEFSESVRSGADEDSIQNIGKELLKENTRSGVSISQPKCSTITTATLQKSPTRQFTILDLNIHRFMLHADCRAFLHGVLVVLCGTRVHLNELVPWLLMVVVKWNPEGIT* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0999 302 CDD SANT 54 83 IPR001005 -
Amo12g0999 302 PANTHER MYB PROTEIN-RELATED 10 41 - -
Amo12g0999 302 PANTHER MYB PROTEIN-RELATED 40 84 - -
Amo12g0999 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 83 IPR017930 -
Amo12g0999 302 PANTHER MYB PROTEIN-RELATED 83 201 - -
Amo12g0999 302 PANTHER TRANSCRIPTION FACTOR MYB88 10 41 - -
Amo12g0999 302 CDD SANT 20 41 IPR001005 -
Amo12g0999 302 ProSiteProfiles Myb-like domain profile. 46 83 IPR001005 -
Amo12g0999 302 PANTHER TRANSCRIPTION FACTOR MYB88 40 84 - -
Amo12g0999 302 PANTHER TRANSCRIPTION FACTOR MYB88 83 201 - -
Amo12g0999 302 SMART sant 50 91 IPR001005 -
Amo12g0999 302 SUPERFAMILY Homeodomain-like 39 83 IPR009057 -
Amo12g0999 302 Gene3D - 53 90 - -
Amo12g0999 302 Pfam Myb-like DNA-binding domain 51 83 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0999 Amo-Chr12 24654434 24658862 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0999 13 83 MYB Transcription Factor Family AT2G02820 64.444 7.32e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo12g0999 Myb_DNA-binding 2.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0999 K09422 - adu:107489199 202.986