Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0996 ATGAAGAAACAGGAAGAACAGTGTAACAGAGAATCTAAGAAGAAGGGTCACATTGTAACTTGGACTCGAGATGATATACTGAGAGAGCAGATTGGTATCCATGGAACTGAAAATAACATTAAAATGRGTTCTTGTTATTGCCAAAAAACTATATGCAKTTGGGCAATTATTGCTTCTAAATTCAAGGACAAAACGACAAGACAGTGCAGAAGAAGATGGTACACTTACTTGAATTCTGATTTCAAGAAAGGTGGATGGTCACCAGAGGAAGACATGCTCTTATGTGAGGCTCAAAAATTATATGGCAACAGATGGACAGAAATARWGAAAGTGGTTTCAGGAAGAACGGATAATGCTGTGAAAAATCGCTTCTCTATGCTCTGCAGAAAGAGGCAAAAATATGAAGCTTTAGCTAAAGAGAACAGCATTTCATCACACATCAATTCAAATAACAAGAAAATTGTTTTCCAACATGCTTATAATACAGATGCAACATCAGAATCTGCTATATCTATCAAGAAAATGAGGAGGGCTCATATCACAGATGATGGAGGGAAGATCAAGTTTGGAGATAGATCACATTTGCGAAATGGAACTTCGATAAATCAGCATCCAAGGACACCRTTCGCAKTATTAGCTCAAAACTCAYAAAACATAAACAATTTGCTAGACGAGCTTCAAATTTGCAATGCCAAGTTTAGTACTCAAAATAATAAAACTCAAGGAACATTYCTAAAAAGGGATGACCCAAAAATAGATGCATTAATGCAACAAGCAGAGTTGCTTAGCTCACTAGCTCAAAATATTGATACAGAGGACATGGACCAAAGTCTTGAAAACACGTGGAAGGTGAACCTCCATAATCTCTTGGCCTACTTGAGTAGTAATGAGGGAGGCCAGCCATGTTGGAGGCAAATGGATCTGTATGAAGACTCTCCAGCCAGTTCTGAATACAGTACAGGATCAACTATCCTCCCTCTCTCAGCTGGTGACATTATGGAACACTCTTCACACCGGGATATAGAAACTGAAATGAAAACCACACAAATTGAAGATAAGAAAGAAGTAGATGGATGTGAGAGTGGTGTTCTAGTTACTGCAACCCTGGATCAAGATATGCTGCTGAATTCAGAAGAACAAATAAACACTGATAGCGCTGTTTTTGTCTCATCAAGAGTGGAGTTTGGTTCCCCTATTCAAGTAACTCCGATATTCAGATCTTTGGCTGCAGGGATTCCCAGCCCACAATTTTCGGAAAGTGAAAGGAACTTCTTAAGGAAAACACTAGGAGTGGAGTCTCCATCTCTCAACCCAAGTGCTCAACCATCACAACCGCCACCCTGCAAAAGAGCCCTACTAGACAGTTTACAATCCTAG 1377 0.3929 MKKQEEQCNRESKKKGHIVTWTRDDILREQIGIHGTENNIKMXSCYCQKTICXWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKLYGNRWTEIXKVVSGRTDNAVKNRFSMLCRKRQKYEALAKENSISSHINSNNKKIVFQHAYNTDATSESAISIKKMRRAHITDDGGKIKFGDRSHLRNGTSINQHPRTPFAXLAQNSXNINNLLDELQICNAKFSTQNNKTQGTFLKRDDPKIDALMQQAELLSSLAQNIDTEDMDQSLENTWKVNLHNLLAYLSSNEGGQPCWRQMDLYEDSPASSEYSTGSTILPLSAGDIMEHSSHRDIETEMKTTQIEDKKEVDGCESGVLVTATLDQDMLLNSEEQINTDSAVFVSSRVEFGSPIQVTPIFRSLAAGIPSPQFSESERNFLRKTLGVESPSLNPSAQPSQPPPCKRALLDSLQS* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0996 458 PANTHER MYB PROTEIN-RELATED 11 282 - -
Amo12g0996 458 PANTHER MYB PROTEIN-RELATED 294 453 - -
Amo12g0996 458 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 132 IPR017930 -
Amo12g0996 458 ProSiteProfiles Myb-like domain profile. 24 77 IPR001005 -
Amo12g0996 458 PANTHER TRANSCRIPTION FACTOR MYB88 294 453 - -
Amo12g0996 458 MobiDBLite consensus disorder prediction 428 458 - -
Amo12g0996 458 PANTHER TRANSCRIPTION FACTOR MYB88 11 282 - -
Amo12g0996 458 Gene3D - 85 157 - -
Amo12g0996 458 SUPERFAMILY Homeodomain-like 56 136 IPR009057 -
Amo12g0996 458 CDD SANT 86 124 IPR001005 -
Amo12g0996 458 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
Amo12g0996 458 SMART sant 17 79 IPR001005 -
Amo12g0996 458 SMART sant 82 130 IPR001005 -
Amo12g0996 458 CDD SANT 20 77 IPR001005 -
Amo12g0996 458 Pfam Myb-like DNA-binding domain 83 125 IPR001005 -
Amo12g0996 458 Gene3D - 7 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0996 Amo-Chr12 24541345 24544777 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0996 72 456 MYB Transcription Factor Family AT1G14350 48.668 9.63e-115 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo12g0996 Myb_DNA-binding 1.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0996 K09422 - gmx:100807667 589.341