Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0973 ATGGTTTCTTTTGGAAGTTGTAGTATTTATAGAAGAACAGAGAATCGTTTTCTTATGTGTTCAATTCTCAAATTTCGTAGCATATATGGTTCCTTTAAATTCTTTCATTCTAAACTTAACCGGGGTTCCAGTGCTTCAGATAAAACCTCCAAACTGGAACCAAATAGGAATAATCACAATAGGGTAGGGATTTTTTGGGACTTAGATAACAAGCCACCAAACCCAATTCCACCTTATGAAGTTGCCAATAAGCTTAGAATTGTTGCATCTTCATTTGGGGTTGTTAGGCATATGGTAGCTTATGCAAATAGCCACACTTTCAGCAGTGTCCCACACGCTGTCCGGCAGAGGAGGAAAGAGAAGGAGCTGTATAACCGACTGGAGAGCAAGGGCGTCATCAAGCGGAATGAGCCTCATGTTTGCAGGGTTTGTGGGAGAAAGTTTTACACTAATGAGAAGCTTGTTAACCATTTCAAGCAGCTACATGAGAGCGAGCAAACGAAAAGGGTAAACCAGATAGCGTCGGCAAGGGGGAGCCGGAGGGTGAAGTTGGTGGCAAAGTATTCGATGAAGATGGAAAAATATAAGAAGGCTGCAAGGGATATTCTTACTCCAAGAGTAGGGTATGGTTTGGCGGATGAGCTCAAACGCGCAGGATTTTGGGTTCAGACCGTGTTGGATAAGCCACAGGCTGCGGATCGTGCATTGGAAAGTCACATGGTTGATATGATGGATCATAGGAGGGTTGAGTGCATAGTACTTGTGTCTGATGATTATGATTTCGCTAATGTAATAAGGGAAGCGAAGCTACGATGTCTGAAGACAGTTGTCATTGGGGATACTAGTGATGGTGTATTGAAGAGGATTGCTGATACGTCCTTTTCTTGGGAGGAAATTCTAATGGGGAAAGCTAAAAAGGAGGCTGTATCAGTTGTTGAGAATTGGAAGGATCGTGATATTTTGAAAAGGTTAGAGTGGACATACAATCCAGAGGTGGATAAAAAGAAATACGATCCGGCTGATGTGGTTATTGAAGAATCAGAAGATGAGAATATTGAAGATATTTGTGATGATGTTGATGATGACTATAAGGATGGTGGAGGTGCTTGGTGGGAGTTAGATTCAGATGAAAATGTCACAAATGAACAGACACGAAAAGTATAG 1164 0.4184 MVSFGSCSIYRRTENRFLMCSILKFRSIYGSFKFFHSKLNRGSSASDKTSKLEPNRNNHNRVGIFWDLDNKPPNPIPPYEVANKLRIVASSFGVVRHMVAYANSHTFSSVPHAVRQRRKEKELYNRLESKGVIKRNEPHVCRVCGRKFYTNEKLVNHFKQLHESEQTKRVNQIASARGSRRVKLVAKYSMKMEKYKKAARDILTPRVGYGLADELKRAGFWVQTVLDKPQAADRALESHMVDMMDHRRVECIVLVSDDYDFANVIREAKLRCLKTVVIGDTSDGVLKRIADTSFSWEEILMGKAKKEAVSVVENWKDRDILKRLEWTYNPEVDKKKYDPADVVIEESEDENIEDICDDVDDDYKDGGGAWWELDSDENVTNEQTRKV* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0973 387 CDD PIN_LabA-like 149 280 - -
Amo12g0973 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 167 IPR013087 -
Amo12g0973 387 Pfam NYN domain 211 292 IPR021139 GO:0004540
Amo12g0973 387 ProSitePatterns Zinc finger C2H2 type domain signature. 141 162 IPR013087 -
Amo12g0973 387 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 34 380 - -
Amo12g0973 387 PANTHER - 34 380 - -
Amo12g0973 387 Gene3D - 54 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0973 Amo-Chr12 22713519 22715640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0973 61 384 C2H2 Transcription Factor Family AT4G12240 57.485 5.44e-140 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo12g0973 NYN 1.4e-06 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0973 - - lang:109328008 538.11