Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0945 ATGATGAGAGAGGAGGAGCCGTCACCAAACGCGTCGTCGCCGCTGGAGGAGCTTCGCTCTTCGCCGCCGCCGTGGAGGGGAAAGAGGAGATGCTCCCTCGCCAGTCACCGTCGTGCTTCCTGGTTGCCGATGAGGGAGCCGCGAGAACCGAAATCGAAGTTTTACAGATTCAACAAGGAAAGGAACCGGTGGAAGGAGAGAACCGATGGTGCCGTCAAGTTCCCTAAGAACAAGGGTGCTATAACAAAGAGAATGACTGCAATTGAAGAAATGGCCGGAATGGATGTCCTATGCAGTGATAAAACAGGCACATTAACTCTCAATAAGCTTACAGTGAACAAGAATCTAATTGAGGTCTTTGCTGATGGAGTTAATCAGGACATGGTTGTACTTATGGCTGCAAGGGCATCAAGGCTAGAGAACCAAGATGCAATTGATTGTGCAATTGTATCTATGTTAGCAGACCCAAAGAAACTTGCAATTACTAAGGAAATAGGAAGGCGTCTTGGAATGGGCTCTAACATGTATCCTTCTTCGTCGCTGCTAGGAGAAAGCAAAGATAATTTTGCTTCTGTTCCCGTCGATGATCTTATAGAGAATGCAGATGGTTTTGCTGGTGTCTTTCCTGCTAGAAAGCACATTTGTGGGATGACTGGTGACGGAGTGAATGATGCACCAGCTTTGAAGATAGCAGACATAGGTATCGCTATAGCAGATGCAACAGATGCTACAAGAAGTGCCTCTGATATAGTTCTAACAGAACCTGGGTTGAGTGTGATCATAAGTGCTGTTTTAACTAGCCGTGCAATTTTCCAAAGAATGAAAAACTACACAATATATGATGTATCTATCACCATCCGTATTGTGGTTGGCTTTATGTTACTCACATGCATTTGGGAATTTAACTTTCCTCCCTTTATGGTTCTTGTCATAGCCATTCTCAACGATGGTATTACTATCTGCTCTCAAATACCATATTTAAAATGCATTATTTGGAGGTCTTCTCTACAGTTATAG 1017 0.4405 MMREEEPSPNASSPLEELRSSPPPWRGKRRCSLASHRRASWLPMREPREPKSKFYRFNKERNRWKERTDGAVKFPKNKGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVNKNLIEVFADGVNQDMVVLMAARASRLENQDAIDCAIVSMLADPKKLAITKEIGRRLGMGSNMYPSSSLLGESKDNFASVPVDDLIENADGFAGVFPARKHICGMTGDGVNDAPALKIADIGIAIADATDATRSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYDVSITIRIVVGFMLLTCIWEFNFPPFMVLVIAILNDGITICSQIPYLKCIIWRSSLQL* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0945 338 PANTHER CALCIUM-TRANSPORTING ATPASE 77 157 - -
Amo12g0945 338 Gene3D - 256 321 - -
Amo12g0945 338 Gene3D - 77 94 - -
Amo12g0945 338 Gene3D - 95 109 IPR023214 -
Amo12g0945 338 Gene3D - 159 255 IPR023214 -
Amo12g0945 338 SUPERFAMILY Calcium ATPase, transmembrane domain M 76 318 IPR023298 -
Amo12g0945 338 PANTHER PLASMA MEMBRANE ATPASE 77 157 - -
Amo12g0945 338 PANTHER CALCIUM-TRANSPORTING ATPASE 158 319 - -
Amo12g0945 338 SUPERFAMILY HAD-like 91 272 IPR036412 -
Amo12g0945 338 Gene3D - 110 158 IPR023299 GO:0000166
Amo12g0945 338 ProSitePatterns E1-E2 ATPases phosphorylation site. 100 106 IPR018303 -
Amo12g0945 338 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 211 298 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo12g0945 338 MobiDBLite consensus disorder prediction 1 44 - -
Amo12g0945 338 PANTHER PLASMA MEMBRANE ATPASE 158 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0945 Amo-Chr12 21568677 21572061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0945 158 317 Primary Pumps ATPases AT5G62670 79.070 6.96e-85 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0945 K01535 - aip:107607271 411.379