Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0933 ATGGAAGCCATGTTTGTGATCAACCTCGGAGATAAAGCGCACGTGCCCATTCTCACGTTCTCAGAAATGAGCCCTTCTCTCTCATCACTCCACACCCCATACTTGTTCCAAATTGCAAAGAAAGATTATTATTTCACTCAAGTCGAGGCCATAAGCGCCATTGTTCAAGCTTTTGGGTGGAAACAAGTGGTTCCAATATACGTGGACAACGGTTATGGCGAAGGACTCATTGCATCCCTAACCAATTCATTTCAGAAAGCATACATTCGTGTTCCTTATCTCAGCGCCATTGATTTCTCAGCCACAAATGATGCCATTGAGAGAGAGCTCTACAAGCTCATGACTATGCAAACTGGAGTCTTTGTTGTTCACATGACATCCCGTCTTGCCTCTCGTCTCTTCACCATTGCCAAAGACATTGGAATGATGGATGAAGGTTATGTTTGGATTGTGACTGCTGGAATCGCTAATCTCTTTAACTCATTGGACTCTTGGGTTATGAAATCCATGGAAGGTGTGCTGGGTGTTAGGCCTTATATTCCAAGAACAAAACAGCTTCTTGATTTTAGAGCTCGATGGAAAAGAGAGTTCTTAAGAGACAATCCAACACCTGTTGATGTTAATTTGGATGTTTTTGGAATATGGGCCTATGATGCTACTGCTGCATTAGCCATGGCAGCTGAGAAGCTTGACAACACTGTTTTCGGCTTCACTAATGTGAGCAACAACTCCAGCAACGTGACTGATCTTGAAAACTTTGGCGTTTCGCGAAACGGCGAGAAGCTGAGGGAAGCTTTATCAAATGTTAGATTCAAAGGTGTTGATGAAGCATCACCATTTGAGATAGTTAATGTGATTGGTAATAGTGAGAGGAACATTGGATTTTGGACACCACAGAAGGGACTAATCAGAGACATGGATGCAAATAATTCAACTTCTAAGGAGAATCTAAGAACAATTCTATGGCCAGAGGACTCTTACTCTGTTCCAAAGGGATGGGAAATTCCTACAAATGATAATGGCTTCTCTGAATTTGTGAAAGTAATCCATGATCCTATTACCAATTCTACAAAGGTCACCGGGTTCTGCATTGATGTGTTTAATGTTGTGGTAGAAGTATTAGAATTTAGAATATCATCATTAGGGAACAAAATCAGAAAAATATCAAAGAGGATTAGATTAGAAAAAAAAATCAATGTAATTTATTAG 1209 0.4036 MEAMFVINLGDKAHVPILTFSEMSPSLSSLHTPYLFQIAKKDYYFTQVEAISAIVQAFGWKQVVPIYVDNGYGEGLIASLTNSFQKAYIRVPYLSAIDFSATNDAIERELYKLMTMQTGVFVVHMTSRLASRLFTIAKDIGMMDEGYVWIVTAGIANLFNSLDSWVMKSMEGVLGVRPYIPRTKQLLDFRARWKREFLRDNPTPVDVNLDVFGIWAYDATAALAMAAEKLDNTVFGFTNVSNNSSNVTDLENFGVSRNGEKLREALSNVRFKGVDEASPFEIVNVIGNSERNIGFWTPQKGLIRDMDANNSTSKENLRTILWPEDSYSVPKGWEIPTNDNGFSEFVKVIHDPITNSTKVTGFCIDVFNVVVEVLEFRISSLGNKIRKISKRIRLEKKINVIY* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0933 402 Gene3D - 217 344 - -
Amo12g0933 402 Pfam Receptor family ligand binding region 3 274 IPR001828 -
Amo12g0933 402 PANTHER OS06G0188250 PROTEIN 1 378 - -
Amo12g0933 402 Gene3D - 45 207 - -
Amo12g0933 402 SUPERFAMILY Periplasmic binding protein-like I 3 323 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0933 Amo-Chr12 20900429 20901710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0933 1 379 Ion Channels AT2G24720 44.938 2.94e-116 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0933 K05387 - lja:Lj0g3v0303259.1 458.373